PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G58280.1
Common NameMCK7.15
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 273aa    MW: 31673.6 Da    PI: 9.2386
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G58280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-19127215197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  f+k +++s+v +  +l lp +f++++   +ee++++ lede+g+++e  +i r+ +    l++GWk+F+ +++L++gD ++F+l++ ++f  ++ vf
  AT5G58280.1 127 FVKSMVRSHVYSCFWLGLPSRFCADNF--PEETMEIELEDEEGEVYEAVYIGRRAG----LSGGWKRFALDHKLDDGDALLFELVEPKKF--KIYVF 215
                  89**********************998..56889****************544444....***********************9987888..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-22119216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-24120217IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-18125216No hitNo description
SMARTSM010191.1E-26127218IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098127218IPR003340B3 DNA binding domain
PfamPF023621.9E-17127215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAMAYEEARK LRLQENHKRF QSNFVALPQF QLLQQRNHKP IDKALLATAE PRRSSRVRTV  60
ISSYRDDVVV DTGRTSNLRR SRHSSTWATY ISRPLHECKF ASYEEKVGAF KAAEKFQRSL  120
KSPHPYFVKS MVRSHVYSCF WLGLPSRFCA DNFPEETMEI ELEDEEGEVY EAVYIGRRAG  180
LSGGWKRFAL DHKLDDGDAL LFELVEPKKF KIYVFKGNEN ANLTSARKRG RATTPSEEEE  240
EEEDKDVEES GDEEHSSRAT KRSSVRLLRK RKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231ARKRGRA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184240840.0
Genevisible247809_at0.0
Expression AtlasAT5G58280-
AtGenExpressAT5G58280-
ATTED-IIAT5G58280-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G58280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G58280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0192281e-112AB019228.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCK7.
GenBankCP0026881e-112CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200636.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9FHB20.0Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A1P8B9P00.0A0A1P8B9P0_ARATH; AP2/B3-like transcriptional factor family protein
STRINGAT5G58280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Representative plantOGRP9951658
Publications ? help Back to Top
  1. Hanano S, et al.
    Analysis of gene expression in Arabidopsis thaliana by array hybridization with genomic DNA fragments aligned along chromosomal regions.
    Plant J., 2002. 30(2): p. 247-55
    [PMID:12000460]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]