PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0301181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 326aa    MW: 35929.1 Da    PI: 7.3022
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0301181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.4e-3293150260
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                             ++vrY+eClkNhAa++Gg+++DGCgEfmp  geegt +alkCaAC+CHRnFHR+ev+ e
  RcHm_v2.0_Chr6g0301181  93 SNVRYRECLKNHAANIGGNVFDGCGEFMPC-GEEGTLEALKCAACDCHRNFHRKEVDGE 150
                             689**************************9.999*********************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MDFRTQDNEM RTWRKRRLGN IHNGTPTAIS AFTATHQTLD HHHPLQPHHV QPVPLTTRDL  60
DPDRVGSTAV APSGGVLSGG PKSKTPSSTS TTSNVRYREC LKNHAANIGG NVFDGCGEFM  120
PCGEEGTLEA LKCAACDCHR NFHRKEVDGE TTPFGPGSRS RSIMLSPLQL PPPLPSPSSA  180
LHHHRHQKFS IVQPMSVAFG GGTESSSEDL NVFDNGDGVG GGVVPPFSLS KKRFRTKFTA  240
EQKVRMVEFA ERVGWRIQKQ DEEDVEKFCD EVGVKRQVLR VWMHNNKNTV KKMQHDHDIT  300
TTTSQLALEN VEAHEEPGQE GGGTDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.16e-64ZF-HD family protein