PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0300031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 517aa    MW: 58087.4 Da    PI: 9.4005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0300031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.5e-1821107599
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             +  s  l+s rl +p +f+ +++g +  s  ++l  +sg+ W+v l    + g  ++  GW  Fv+++ L+ gDf++F++dg+ +f 
  RcHm_v2.0_Chr6g0300031  21 F--SADLSSERLKIPERFMIHMEGRT--SGIVVLSGPSGNAWNVHL--IEQNGDLFFHYGWPAFVRDHSLECGDFLIFRYDGELRF- 100
                             4..77889999********9998884..44899999**********..88888899************************986666. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                              +v++f++
  RcHm_v2.0_Chr6g0300031 101 -TVQIFDQ 107
                             .9***997 PP
2B347.33.7e-152172971394
                             TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             s  l +p kf  +h   ++++++++l +++g+sW+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ ef+ ++
  RcHm_v2.0_Chr6g0300031 217 SYTLNIPYKFSVAHL--PNCKVKIVLLNLKGESWTVNSVPtTRVHTSHTLCGGWMAFVRYNDIKLGDICIFELVRECEFRVHI 297
                             55799*****99996..45999***************954566666799*************************999996655 PP
3B349.19.9e-16403496197
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkl 84 
                             f+k++++ + + s  l +p +f +eh  +     +++++l++++g+ W+v+   + k++  +++ +GW  Fv+ n+++ gD+++F+l
  RcHm_v2.0_Chr6g0300031 403 FVKIMKKFNISGSYTLKIPYQFSTEHlpN----YKTEIVLRNSKGECWTVNSVPDSKGRVvHTFCGGWMAFVRGNDINIGDICIFEL 485
                             778888888888889***********533....3468***************5544444379999*********************9 PP

                             -SSSEE..EEEEE CS
                      B3  85 dgrsefelvvkvf 97 
                             +g  ++e++v++ 
  RcHm_v2.0_Chr6g0300031 486 VG--KREMRVHIS 496
                             98..555677765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    
MAEGALKVMP TARRPHFFAF FSADLSSERL KIPERFMIHM EGRTSGIVVL SGPSGNAWNV  60
HLIEQNGDLF FHYGWPAFVR DHSLECGDFL IFRYDGELRF TVQIFDQTAC EKEAAFHSQC  120
GQSSSYFEKL IGQKRAREEG CGLDRLLFEE STSSQQSKTY ENPGLDVVIY KAKQAIQNNL  180
NDRVCMQISS AHEVAQSFSS SNPYFLRIMK SFNISGSYTL NIPYKFSVAH LPNCKVKIVL  240
LNLKGESWTV NSVPTTRVHT SHTLCGGWMA FVRYNDIKLG DICIFELVRE CEFRVHIQTG  300
ETSSRLCAGL ALKGLSKKVK GNSPKVHTKS LRKIEMSETR KHGSTSKSIA KGASQSKAAS  360
KKLATRRKKS VDDELGSKAE LRMRLTLDEE KAARSFTSCF PNFVKIMKKF NISGSYTLKI  420
PYQFSTEHLP NYKTEIVLRN SKGECWTVNS VPDSKGRVVH TFCGGWMAFV RGNDINIGDI  480
CIFELVGKRE MRVHISGADK NGFDHQGGEA TTNAEYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-25B3 family protein