PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G33280.1
Common NameARF36, F17M5.40, REM16
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 337aa    MW: 38760.1 Da    PI: 6.8953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G33280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-18341141398
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++rlv+p+kf ++++ k   ++ +tl+++sg +++v +  +  +++ + ++ GW +Fvk++ L+e+D +vFk++g sef   v vf+
  AT4G33280.1  34 HNRLVIPRKFSTHCKRK--LPQIVTLKSPSGVTYNVGV--EEDDEKtMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEF--EVLVFD 114
                  789********888766..7889***************..6666665889**********************9998999..777776 PP
2B364.51.6e-20223319198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 
                  f+  +++s+v +++ l++p k + ++++++++  +++ ++ +  +We+k+++ + +g+  +++GWk+Fv++n+L+egD++vF+   ++ +  +l+v +
  AT4G33280.1 223 FLVFMKRSHVVSKCFLTIPYKWCVKNMLITRQ--EVV-MQVDQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPAnSEtKPLHLNVYI 317
                  6778999**********************877..455.5668999*****885555565699*********************553556777778888 PP

                  E- CS
           B3  97 fr 98 
                  fr
  AT4G33280.1 318 FR 319
                  77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2120114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-2122114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.53522116IPR003340B3 DNA binding domain
CDDcd100171.51E-1824114No hitNo description
SMARTSM010196.1E-2125116IPR003340B3 DNA binding domain
PfamPF023621.3E-1534114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-18223319IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-22223321IPR003340B3 DNA binding domain
CDDcd100171.83E-20223319No hitNo description
SuperFamilySSF1019361.04E-18223322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.14223321IPR003340B3 DNA binding domain
PfamPF023625.7E-19223320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEENCEDCMK WEEELYWTHF QTLHFTQLLL PGFHNRLVIP RKFSTHCKRK LPQIVTLKSP  60
SGVTYNVGVE EDDEKTMAFR FGWDKFVKDH SLEENDLLVF KFHGVSEFEV LVFDGQTLCE  120
KPTSYFVRKC GHAEKTKASH TGYEQEEHIN SDIDTASAQL PVISPTSTVR VSEGKYPLSG  180
FKKMRRELSN DNLDQKADVE MISAGSNKKA LSLAKRAISP DGFLVFMKRS HVVSKCFLTI  240
PYKWCVKNML ITRQEVVMQV DQTKWEMKFN IFGARGSGGI STGWKKFVQD NNLREGDVCV  300
FEPANSETKP LHLNVYIFRG EETERTNNVD PVYTISE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.315980.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865158550.0
Genevisible253375_at0.0
Expression AtlasAT4G33280-
AtGenExpressAT4G33280-
ATTED-IIAT4G33280-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G33280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G33280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4411170.0AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195054.20.0AP2/B3-like transcriptional factor family protein
SwissprotQ8RYD10.0REM16_ARATH; B3 domain-containing protein REM16
TrEMBLD7M8S60.0D7M8S6_ARALL; Predicted protein
STRINGAT4G33280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Representative plantOGRP6299819
Publications ? help Back to Top
  1. Carter C, et al.
    The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins.
    Plant Cell, 2004. 16(12): p. 3285-303
    [PMID:15539469]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]