PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0299611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26488.6 Da PI: 8.5644 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51 | 2.5e-16 | 2 | 75 | 19 | 98 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 p f+++ g +++ + +l+ ++g+sW+v l + + ++ ++ kGW++Fvk + L+egDf+vF+++g+ +f v++++ RcHm_v2.0_Chr6g0299611 2 PTAFVDKLRGTPPC--KCVLRGPNGQSWNVAL--EERESGLFFCKGWRKFVKYHCLEEGDFLVFHYTGKLKF--DVTIYD 75 78899999888888..79**************..999999*************************9885555..777776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MPTAFVDKLR GTPPCKCVLR GPNGQSWNVA LEERESGLFF CKGWRKFVKY HCLEEGDFLV 60 FHYTGKLKFD VTIYDESACE MDLEVSKRRS LADGSSDQVM SGKAVIEETP TGLTVFQSRN 120 SCFMKTLETF RRYDLTIPQK IVKAEGLKGH MSLTLRDPEE RSRIVETDVT VDKRLKLTKG 180 WCQGCREFNI SIGDKVVFEF VKPNVIQLHI FRGKDVLLSG PKVVDSSNYR QI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 1e-15 | B3 family protein |