PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31690.1 | ||||||||
Common Name | F28M20.120, REM9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 461aa MW: 51456.9 Da PI: 6.3357 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.8 | 1.3e-20 | 22 | 99 | 11 | 96 |
HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++s+ l +p ++++eh +g k+e+kt+tl++ s r+Wevk+ ++++ lt+GWkeFv+a++L+ gDfvvF+++g++ f +v++ AT4G31690.1 22 FQSN-LKIPVNYFSEHiEG-KHEGKTVTLRTdASERTWEVKM--EGHR----LTEGWKEFVEAHDLRIGDFVVFRHEGDMVF--HVTA 99 5555.9**********644.467789999986899*******..6666....************************999999..7665 PP | |||||||
2 | B3 | 70.5 | 2.2e-22 | 149 | 243 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f++ +++++ +++ +++p++f+++ g +k ++ +++l++e+g+sWe +++ + sg+++l +GW F+ +n+L++gD+++Fkl + + +++v++++++ AT4G31690.1 149 FSQSVTHSNISRDAVSVPRDFVKRSGFSKGRH-EIVLMNEEGKSWESEVK-SYMSGAVYLVGGWTTFCTENKLDVGDSCTFKLLQ-KAKTPVFQLCSR 243 5788899999**************98887665.****************3.5555669************************998.88889****997 PP | |||||||
3 | B3 | 30.6 | 6e-10 | 246 | 314 | 17 | 86 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldg 86 lp +f++ +g+++++ +++l d++ +W++ l+++ ++ y+++ + Wk+F+ an++ +g+++ ++l++ AT4G31690.1 246 HLPLSFTKVNGLINPG--KIILVDKDRAEWSMMLKVDSRGAVYIIGgNDWKSFCAANEVGAGESLALELIQ 314 69*****999999665..8***************666665557666367******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-26 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-24 | 9 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.93 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-20 | 13 | 98 | No hit | No description |
SMART | SM01019 | 2.6E-26 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-15 | 24 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.83E-21 | 142 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-22 | 142 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.734 | 148 | 244 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.95E-18 | 148 | 242 | No hit | No description |
SMART | SM01019 | 2.2E-26 | 149 | 244 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 149 | 243 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-4 | 245 | 328 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-10 | 246 | 318 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-12 | 246 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.7E-9 | 246 | 315 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.15E-12 | 247 | 316 | No hit | No description |
PROSITE profile | PS50863 | 10.546 | 247 | 332 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MANASPLSPT NQHFFQPLLP GFQSNLKIPV NYFSEHIEGK HEGKTVTLRT DASERTWEVK 60 MEGHRLTEGW KEFVEAHDLR IGDFVVFRHE GDMVFHVTAL GPSCCEIQYP QSSRHEEGEE 120 SGENEISEKE GEENVQKESD KSSSDLNCFS QSVTHSNISR DAVSVPRDFV KRSGFSKGRH 180 EIVLMNEEGK SWESEVKSYM SGAVYLVGGW TTFCTENKLD VGDSCTFKLL QKAKTPVFQL 240 CSRTKHLPLS FTKVNGLINP GKIILVDKDR AEWSMMLKVD SRGAVYIIGG NDWKSFCAAN 300 EVGAGESLAL ELIQGGVLLN QITTCFQMEQ PSFKAEDGRH KRARVQNRSQ ETDKGAETSR 360 ASTMGPKLEI TEKGEPSRAS TMRPKVEIRE KIAETGEPSR ASNKSSGIEG NLQHTKPCSV 420 KTDQLAKVKE SVVDTLTSIG RFQAELETMK RKLEDSLQEL N |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G31690 | |||||
AtGenExpress | AT4G31690 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31690 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441294 | 0.0 | AJ441294.1 Arabidopsis thaliana mRNA for putative auxin response factor 23 (arf23 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194896.2 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | O81778 | 0.0 | REM9_ARATH; B3 domain-containing protein REM9 | ||||
TrEMBL | A0A178V3E4 | 0.0 | A0A178V3E4_ARATH; Uncharacterized protein | ||||
STRING | AT4G31690.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31690.1 |
Entrez Gene | 829297 |
iHOP | AT4G31690 |
wikigenes | AT4G31690 |
Publications ? help Back to Top | |||
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