PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0295411
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 515aa    MW: 56641 Da    PI: 5.1312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0295411genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.57e-1051265061374
                    GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn....sseela 79 
                             lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +  + + +k l  + +++++    +++++a
  RcHm_v2.0_Chr6g0295411 126 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGaGGVSHSKHLFGNGSHREHghhpTTDVMA 212
                             68**********997776669***********9987769*****************98433333333433333333345679***** PP

                    GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetg 162
                             a++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  s   s  +++etg
  RcHm_v2.0_Chr6g0295411 213 AFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSCrrSIGTVQETG 299
                             *********************************************************776556*********776688999****** PP

                    GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh. 248
                             +rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++ve+e+   
  RcHm_v2.0_Chr6g0295411 300 RRLTAFATSIGQPFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTLVEEEVRPa 383
                             ******************9999*****************************966665555...9********************998 PP

                    GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                              ++ F++rf+++l++ysa++dslea++p +s++r  vEr++lg++i   +a   ++   + e   +W e+l++ GFkp+p+s  + +
  RcHm_v2.0_Chr6g0295411 384 RDGGFVARFMDSLYHYSAVYDSLEAGFPMQSRARELVERVFLGPRIAGSLARIYRA---QGEVGCSWWEWLGAIGFKPMPISFANHC 467
                             99****************************************************99...888899********************** PP

                    GRAS 336 qaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                             qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  RcHm_v2.0_Chr6g0295411 468 QAKLLLGLFN-DGYRVEEVaNHRLVLGWKSRSLLSASIWT 506
                             **********.******86488899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    
MTELLMLSSA MELELDLDLD LSGCSTETTS TTNTAISPDQ WYDWSPVVDW ESLAPIDQLA  60
GGGDFHELIE SMMEGRDGCE MDSPSSETIE EASNSCYTTT SSQSTDVTML EEGVASNGED  120
SKGLRLVHLL MAAAEALTGA NKSRDLARVI LVRLKELVSP TDGTNMERLA AYFTEALQGL  180
LEGAGGVSHS KHLFGNGSHR EHGHHPTTDV MAAFQLLQDM SPYVKFGHFT ANQAILEAVA  240
HDRRVHIVDY DIMEGIQWAS LMQALVSRKD GPPTPHLRIT ALSRGGSCRR SIGTVQETGR  300
RLTAFATSIG QPFSFHQCRL DSDETFRPSA LKLVKGEALV INCMLNLPHF SYRSPDSIAS  360
FLSGAKTLNP RLVTLVEEEV RPARDGGFVA RFMDSLYHYS AVYDSLEAGF PMQSRARELV  420
ERVFLGPRIA GSLARIYRAQ GEVGCSWWEW LGAIGFKPMP ISFANHCQAK LLLGLFNDGY  480
RVEEVANHRL VLGWKSRSLL SASIWTSPPQ SDFAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-164GRAS family protein