PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0288851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 153aa MW: 16650.5 Da PI: 8.8312 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.6e-38 | 44 | 131 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq RcHm_v2.0_Chr6g0288851 44 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQ 130 7*************************99*********************************************************** PP DUF260 87 l 87 + RcHm_v2.0_Chr6g0288851 131 V 131 8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence |
MCSQSPHFLL HLPLTSFVQH FLVHPSTMAS GSTGSSGTTG TGSPCGACKF LRRKCASDCI 60 FAPYFCSEQG PARFAAIHKV FGASNVSKLL LHVPVHDRCE AVVTIAYEAQ ARIRDPVYGC 120 VAHIFALQQQ VFVLVLVLAK YKTLFSRNCF LIG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-52 | LBD family protein |