PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0285371

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 837aa MW: 93387.1 Da PI: 6.8232

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0285371	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.1	2.1e-20	673	766	2	92
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ RcHm_v2.0_Chr6g0285371 673 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY 758 79***********************999999****7778*****777777777777.*****************9 PP E-SS.SEE.. CS B3 84 ldgr.sefel 92 ++ ++ ++ RcHm_v2.0_Chr6g0285371 759 --SDvKCNKY 766 ..44355544 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MVLLLLLGDR PDALCCFSVR VRDKSSTRKQ RVPTLSSPAS LIRYTTLSLL HLSVPTIPYL 60 IPTKKPKPFF LVRFDTMDGV QVQVHGNHHQ DLHGEDHHSQ HLVGKEVMRN DFGEEGDAAD 120 LWLDNEQDSL LADVNDGTAS IFCNDFPPLP DFPCMSSSSS SSSTRVPVKT VSSSSSASSS 180 SSAASWAVLK SDAEDNNNYH SQDYQQQQDN NNNYYSRNDS ADAHPAGALS STASMEISQP 240 SDLGMECMDM METFGYIDLF EGNELFDPSS IFQNENPMMD QFQAQEQPPQ EQMHADNQTS 300 HPQENMTMGD QSNKVPEDDM ASVFLEWLRS NRETVSAEDL RSVKIKKSTI ESAARRLGGG 360 KEAMKQLLKL VLEWVQTNHL QKRRGTKDSG IQQYAVDPFQ NAIPNPNPSL NPTQNPPISS 420 PWMASPQYDA AAPILVPTPS QVGYPSTPMM GFMGQDPFGN GPGYQQPNSD QYQHQMLETA 480 PTWAPSSPFM GNNYGSFPDS NIQLAPPQHQ QPLSGYGGQY GQYQYFQGQS GEPQLVRLGS 540 SATKEARKKR MQRQRRTLSH HHGRHHGHQQ NQHPNQMPDQ RLVGNADHNC TTAAMGNPAA 600 SNWFYWPTTA AGGPAPAATP AMMQTMAPEA APLVLPVDRP ASQGQNYNPG RINTQERRQG 660 WRPENKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE LEARDGISIA MEDIGTSRVW 720 NMRYRYWPNN KSRMYLLENT GDFVRANGLQ EGDFIVIYSD VKCNKYVWTF LYSNNPLLLF 780 SFKFDYSILV TSDAQMIRGV KVRQAGTKSE TKRPGKSQRN QHASTPSGNN GLSSKKQ

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MVLLLLLGDR PDALCCFSVR VRDKSSTRKQ RVPTLSSPAS LIRYTTLSLL HLSVPTIPYL  60
IPTKKPKPFF LVRFDTMDGV QVQVHGNHHQ DLHGEDHHSQ HLVGKEVMRN DFGEEGDAAD  120
LWLDNEQDSL LADVNDGTAS IFCNDFPPLP DFPCMSSSSS SSSTRVPVKT VSSSSSASSS  180
SSAASWAVLK SDAEDNNNYH SQDYQQQQDN NNNYYSRNDS ADAHPAGALS STASMEISQP  240
SDLGMECMDM METFGYIDLF EGNELFDPSS IFQNENPMMD QFQAQEQPPQ EQMHADNQTS  300
HPQENMTMGD QSNKVPEDDM ASVFLEWLRS NRETVSAEDL RSVKIKKSTI ESAARRLGGG  360
KEAMKQLLKL VLEWVQTNHL QKRRGTKDSG IQQYAVDPFQ NAIPNPNPSL NPTQNPPISS  420
PWMASPQYDA AAPILVPTPS QVGYPSTPMM GFMGQDPFGN GPGYQQPNSD QYQHQMLETA  480
PTWAPSSPFM GNNYGSFPDS NIQLAPPQHQ QPLSGYGGQY GQYQYFQGQS GEPQLVRLGS  540
SATKEARKKR MQRQRRTLSH HHGRHHGHQQ NQHPNQMPDQ RLVGNADHNC TTAAMGNPAA  600
SNWFYWPTTA AGGPAPAATP AMMQTMAPEA APLVLPVDRP ASQGQNYNPG RINTQERRQG  660
WRPENKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE LEARDGISIA MEDIGTSRVW  720
NMRYRYWPNN KSRMYLLENT GDFVRANGLQ EGDFIVIYSD VKCNKYVWTF LYSNNPLLLF  780
SFKFDYSILV TSDAQMIRGV KVRQAGTKSE TKRPGKSQRN QHASTPSGNN GLSSKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-126	B3 family protein