PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0284711

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 289aa MW: 33317.1 Da PI: 4.7893

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0284711	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.8e-19	31	118	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 Wt++e+ +Li+ +++++ +lrrg+lk+ +Weev+ + + + +++++qC++k+e+l++r++ +k++ + s +pyf RcHm_v2.0_Chr6g0284711 31 WTHEETVHLIQSYQDKWYELRRGQLKASQWEEVAVTVaarcgyEYTEPSKTATQCRHKMEKLRQRHRSVKKRLGLS---FGSGWPYF 114 *********************************998666666666689********************94...5557** PP trihelix 83 dqle 86 d +e RcHm_v2.0_Chr6g0284711 115 DLME 118 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MATPPSPTAS PSASPVSATA TATKKPHPIP WTHEETVHLI QSYQDKWYEL RRGQLKASQW 60 EEVAVTVAAR CGYEYTEPSK TATQCRHKME KLRQRHRSVK KRLGLSFGSG WPYFDLMERL 120 EQGPMPISAR RPYQEEEEED EEAEEEEEAE DHGGEEEEVD EEEEDNYRKL QSLDYILRRP 180 AIVNRFSSGA KEGHFRDSTA AKRPRESAAD DDGYYGDVVD GQRGTEMVVE LATEIRGFAK 240 RLIGVENMRM EIMRETERCR LEMENKRIDM ILQSQRKIVD SIDRAFGLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-42	Trihelix family protein