PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0270001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 88aa    MW: 9974.73 Da    PI: 10.235
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0270001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.7e-301059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            ri+n++ rqvtfskRrng+lKKA+ELSvLCdaev +iifsstg+ly+y+s
  RcHm_v2.0_Chr6g0270001 10 RIDNSTSRQVTFSKRRNGLLKKAKELSVLCDAEVGLIIFSSTGRLYDYAS 59
                            8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSVLCD AEVGLIIFSS TGRLYDYAST  60
RLDLSFSHSL KYCIILFIDF SLLMDLAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-35MIKC_MADS family protein