PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0259881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 301aa MW: 34690.5 Da PI: 9.9171 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.2 | 4.7e-21 | 15 | 107 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv +p +++++ l++p +f+e + ++ + tl ++ s rsW+v++ rk++g++++++GW++F k+n +++gDf+vF+++g+ RcHm_v2.0_Chr6g0259881 15 FFKVIIPGYSTQH--LRIPPPFLEFIRNDLSDEATLNSNTCSERSWNVRV--RKTKGGVYFKDGWQGFLKDNSVEDGDFLVFEYEGN 97 8899977776665..9*******99966644555666667888*******..**********************************9 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + f v++f++ RcHm_v2.0_Chr6g0259881 98 MHF--SVQIFDN 107 999..9**9997 PP | |||||||
2 | B3 | 44.8 | 2.2e-14 | 222 | 300 | 16 | 98 |
EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +f +eh gg+ ++++ g++W +vkl ++ ++ +l+kGW+eF+ an++k+g ++vF+++ +e +lvv+v++ RcHm_v2.0_Chr6g0259881 222 YSFPTSFYREHlsGGN----YEVVFLKiAGGKRWyQVKL--VRSLRTAYLSKGWSEFACANQIKVGNICVFEVV--EENKLVVHVVQ 300 579********76544....4566666366788846888..999999*************************65..56667999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MVRPKNGIKE KRPSFFKVII PGYSTQHLRI PPPFLEFIRN DLSDEATLNS NTCSERSWNV 60 RVRKTKGGVY FKDGWQGFLK DNSVEDGDFL VFEYEGNMHF SVQIFDNSCC ERDSFPDIET 120 HTKSTFAECK KRHPGRQRKS DIGCSKRPLA LNSRKDNSDN IAKKRLPGRP RKSHIRRYKR 180 PCPSNSGEDN SVPDDIVEES AKSFKSNYPH VKKAIKETFC VYSFPTSFYR EHLSGGNYEV 240 VFLKIAGGKR WYQVKLVRSL RTAYLSKGWS EFACANQIKV GNICVFEVVE ENKLVVHVVQ 300 Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 216 | RRYKRPCPSNSGEDNSVPDDIVEESAKSFKSNYPHVKKAIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 6e-18 | B3 family protein |