PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0259811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 266aa MW: 31040.5 Da PI: 9.9967

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0259811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.5	1.2e-18	22	110	7	99
.-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 7 psdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ ++++ l++p kf+ ++ +++ e tl+le +s sW+v + rk+++ +++++GW+eF ++n L +++f+vF +dg+++f RcHm_v2.0_Chr6g0259811 22 HPRLTTEH-LRIPPKFTLKYiakDLS--ERATLKLERSSECSWSVIV--RKSGRDVYFKDGWQEFLRDNSLGDKEFLVFIYDGKMRF 103 44445555.*********975444..5679***********..*******************************99999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 vk+f+k RcHm_v2.0_Chr6g0259811 104 --SVKIFNK 110 ..9999987 PP
2	B3	59.1	8e-19	189	266	14	99
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++pk+f +e+ ++ +++l++++g++W vk+ + g+ +++GWk F++an++k D+++F+l++ e++lvv+++rk RcHm_v2.0_Chr6g0259811 189 HNVSIPKSFSTEYLSP----GEVSLRNSKGKEWVVKI--VDSNGKLCFSAGWKAFAEANQIKFHDVCTFQLVS--EKRLVVHICRK 266 569********544....37***********..888899*********************986..5667***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MGRKILRKVT EKKRPTFFQL IHPRLTTEHL RIPPKFTLKY IAKDLSERAT LKLERSSECS 60 WSVIVRKSGR DVYFKDGWQE FLRDNSLGDK EFLVFIYDGK MRFSVKIFNK NGCERMDFHN 120 IKAHQNSTVS KSNKRPRGRP RKCSKADSAD KEVKEVEEEE DYNDNPAQEY AELFESEVRQ 180 FTSTIYVPHN VSIPKSFSTE YLSPGEVSLR NSKGKEWVVK IVDSNGKLCF SAGWKAFAEA 240 NQIKFHDVCT FQLVSEKRLV VHICRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	KRPRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35310.1	2e-19	B3 family protein