PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G35310.1
Common NameT4C15.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 288aa    MW: 33214.1 Da    PI: 10.4758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G35310.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.58.1e-2119111197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkvl + d +++++  lp +f+++++++ e s++++++ ++g sWev++  +k+++  ++ ++GW++Fv++n L + +f++F+++g+++f  +v +f
  AT2G35310.1  19 FFKVLQRVDISSENMRALPYDFVRSFSNN-ELSRKMKIKARWGSSWEVEI--CKNPRFyFMEKSGWEKFVSDNALGASEFLTFTHKGNMRF--TVNIF 111
                  99*********************999766.6899****************..******555569**********************99999..88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2013114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2115119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-1918111No hitNo description
PfamPF023622.8E-1919112IPR003340B3 DNA binding domain
PROSITE profilePS5086314.14219114IPR003340B3 DNA binding domain
SMARTSM010196.3E-2319114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-16191285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-11192286IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-7198288IPR003340B3 DNA binding domain
PROSITE profilePS508639.22237288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MARNSDNDMC KEERKRESFF KVLQRVDISS ENMRALPYDF VRSFSNNELS RKMKIKARWG  60
SSWEVEICKN PRFYFMEKSG WEKFVSDNAL GASEFLTFTH KGNMRFTVNI FMQDGKEMLQ  120
PPQSMSFMAS SRPPKREQGI PSLATTIAAE SNGGGNYKRK LNFEKKKAEE SHNSKRTDKV  180
FSVQRESAGA SSSSVAEFSM FIKKSYLIYM WFPKSVQSIH MPKQRTIFKI HHPNMKKSWN  240
VVYVVSGTKS SFSAGWKGLA QEYPLAVGDT CKFSFIKQHE LILFVSKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.376820.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453606320.0
Genevisible266540_at1e-161
Expression AtlasAT2G35310-
AtGenExpressAT2G35310-
ATTED-IIAT2G35310-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G35310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G35310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203530.0BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181074.20.0Transcriptional factor B3 family protein
SwissprotQ5PNU40.0Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLA0A178W1010.0A0A178W101_ARATH; Uncharacterized protein
STRINGAT2G35310.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Mlyn
    The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress.
    Plant J., 2007. 51(5): p. 874-85
    [PMID:17605754]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]