PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 315aa    MW: 35609.1 Da    PI: 10.5087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.4e-1619111199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             ffk+   +  ++++ l++p  f +++  ++    + tltl ++   sW+v+    k ++ ++l++GW+eF ++n L + +f++F +d
  RcHm_v2.0_Chr6g0259781  19 FFKII--KPGFNTDHLRIPPAFRKHIlnEL--SIGATLTLSSSADSSWNVRA--HKIGRDIYLKEGWQEFLRDNSLGDSEFLMFGYD 99 
                             67777..67888889*******86666544..4889****************..99999**************************** PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             g++ f   + +f+k
  RcHm_v2.0_Chr6g0259781 100 GNMHF--SIDIFEK 111
                             *9999..8888876 PP
2B340.93.6e-132323061696
                             EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             + lp  f+++h   ++   + +le+++g +We +     + ++++l++GW +F++ ng++ gD ++F+l++  + ++vv++
  RcHm_v2.0_Chr6g0259781 232 VDLPTGFCRKHL--PPDYYKFILENTEGDRWEANG--VPSNNTILLSRGWVSFARGNGVEIGDDCLFELQS--KSKMVVHM 306
                             569********4..335679***************..99999**************************975..33345554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MARAGFNNGG MEEQKGPTFF KIIKPGFNTD HLRIPPAFRK HILNELSIGA TLTLSSSADS  60
SWNVRAHKIG RDIYLKEGWQ EFLRDNSLGD SEFLMFGYDG NMHFSIDIFE KNCCKRTKAP  120
ALRRHQQSTF TNNTKRPRGR PRKSGDAAEH TLNGESSNST KRPRGRPRKS GDAAEHTLNG  180
ESRNTTKRPR GRPRKSGDAA EHTPNGKSSI PMEYTESRFP AFIRTINKVY GVDLPTGFCR  240
KHLPPDYYKF ILENTEGDRW EANGVPSNNT ILLSRGWVSF ARGNGVEIGD DCLFELQSKS  300
KMVVHMVVHK IRQNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143KRPRGRPRK
2161169KRPRGRPRK
3187195KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.13e-19B3 family protein