PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G18090.1 | ||||||||
Common Name | MRG7.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 301aa MW: 34674.7 Da PI: 9.0534 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.7 | 4.4e-18 | 18 | 109 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk+l ++d +++ + +p +f++++++ +e s ++ l+ ++g sW +k+ +++++ ++ +kGW +F ++ngL +f++F+++g+++f +v + AT5G18090.1 18 FFKILRSADLSSEIMRGIPLNFIKSISE-EELSAKMLLKVSWGSSWPIKI--CRNPSFyFMEKKGWDQFLSDNGLGNDEFLTFTHQGNMCF--TVDI 109 99***99999999999*******99964.57999****************..999999556669**************************9..6666 PP | |||||||
2 | B3 | 41 | 3.4e-13 | 223 | 299 | 15 | 96 |
-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l +pk f e h+ ++e ++ ++ d++g rsW+v +++++++ r + +GW + +k+ gL+ gD+++F+l++ +e++v+v AT5G18090.1 223 FLGIPKMFEELHM--PTEATMFKIHDPEGkRSWDVMYKFSNNQTR--FCAGWIRLAKELGLEIGDVCTFTLIK--PTEMLVRV 299 4679999987776..456779*****99889******88888877..668********************987..56667776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-18 | 11 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 14 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.46E-17 | 16 | 110 | No hit | No description |
SMART | SM01019 | 4.4E-22 | 18 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.605 | 18 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-16 | 18 | 110 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-19 | 209 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.351 | 209 | 301 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.83E-16 | 210 | 297 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-17 | 210 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.6E-13 | 212 | 300 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-10 | 223 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020003 | anatomy | plant ovule | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MKNKAFGQIM DDAENPGFFK ILRSADLSSE IMRGIPLNFI KSISEEELSA KMLLKVSWGS 60 SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NDEFLTFTHQ GNMCFTVDIY QIDGKELLTP 120 RRSATIASSS GRNKREQRNN IYKDVKEEED IESWSESSYP GHKTAESTGR RQRLSLSNKK 180 AKETEKSKKK KMKVESISYD SQDDSLSLVP EFTLTIKKSY LIFLGIPKMF EELHMPTEAT 240 MFKIHDPEGK RSWDVMYKFS NNQTRFCAGW IRLAKELGLE IGDVCTFTLI KPTEMLVRVS 300 K |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145358160 | 0.0 | ||||
Genevisible | 250026_at | 0.0 | ||||
Expression Atlas | AT5G18090 | - | ||||
AtGenExpress | AT5G18090 | - | ||||
ATTED-II | AT5G18090 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00517 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G18090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G18090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087853 | 0.0 | AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence. | |||
GenBank | BT004099 | 0.0 | BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds. | |||
GenBank | BT005553 | 0.0 | BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_197310.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9FK61 | 0.0 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | A0A178UPJ1 | 0.0 | A0A178UPJ1_ARATH; Uncharacterized protein | ||||
STRING | AT5G18090.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Link Out ? help Back to Top | |
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Phytozome | AT5G18090.1 |
Entrez Gene | 831636 |
iHOP | AT5G18090 |
wikigenes | AT5G18090 |