PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0259321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 29242 Da PI: 7.5668 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 4.9e-15 | 19 | 110 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ++ l s ++ +l +p +f +++ +++ e l+++d+s sW++++ ++++ ++l++GW+eF +++ + +g+f++ ++dg RcHm_v2.0_Chr6g0259321 19 CTFL--SPGISNEILKFPQNFQKHIlnELS--ELALLKIKDSSHCSWNIRV--HQTGSCIYLKEGWREFLEDHSIGDGEFLIVRYDG 99 5556..77889999*******977775555..5669***************..77777799************************** PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 r++f +++f+k RcHm_v2.0_Chr6g0259321 100 RMQF--SIQIFDK 110 ****..9999997 PP | |||||||
2 | B3 | 41.8 | 2e-13 | 174 | 252 | 17 | 98 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 v+p + ++++ + + ed++gr+Wev+ + +r++l++GW F + n++k gD++ ++l++ + ++v +++r RcHm_v2.0_Chr6g0259321 174 VFPTEWCRKYlPANRYKFLLRNAEDLEGRTWEVNG--VPTNDRVMLSAGWAAFLQGNQVKKGDVCWLELES--KSKMVAHIIR 252 7788888888633333333445688999*******..99999**************************865..5556888777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MATRTFGNGV EEKKGPTFCT FLSPGISNEI LKFPQNFQKH ILNELSELAL LKIKDSSHCS 60 WNIRVHQTGS CIYLKEGWRE FLEDHSIGDG EFLIVRYDGR MQFSIQIFDK NHVERVNFPD 120 TETHDKNQTF ANNSELNGGE EDYQHYRARE NAKQFTSKFP TVAITIGNSS YYAVFPTEWC 180 RKYLPANRYK FLLRNAEDLE GRTWEVNGVP TNDRVMLSAG WAAFLQGNQV KKGDVCWLEL 240 ESKSKMVAHI IRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 9e-15 | B3 family protein |