PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0256841

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 451aa MW: 50393.7 Da PI: 6.7085

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0256841	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.2	5.6e-17	98	186	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +kv++ps+v+ +l lpkkf+ h ++k ++++ ledesg++++ k+ + + l++GW++F a++L egD+vvF+++ s RcHm_v2.0_Chr6g0256841 98 IKVMLPSHVTGGFWLGLPKKFCCVH-LPK-HDTMIALEDESGEEYQTKY--LADK--VGLSGGWRGFSIAHKLVEGDVVVFHRVTPS 178 699*****************777.343.5679***********..4444..45*********************76656 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f +v ++r RcHm_v2.0_Chr6g0256841 179 KF--KVYIVR 186 66..888877 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MAIVQEQKQS SKVLQIKRGR SPNKEEKLLK RKSSCLKQTT KNNMVNAKSI KSESSLKPKR 60 LKRATEESVY DTSQAQLSVL ERAKEIEASL APAFPTLIKV MLPSHVTGGF WLGLPKKFCC 120 VHLPKHDTMI ALEDESGEEY QTKYLADKVG LSGGWRGFSI AHKLVEGDVV VFHRVTPSKF 180 KVYIVRSKGS DESDCSLGLM NLGVCIKEMD TGDITTCEGA EYEDIRPISV ENPQNYNTIA 240 CNTKSSPIAD LSENDTGSLG SEVFDGIRLA ESVIPFKEVS SLENFNIIVD GFIINSEFPK 300 PVLAKYYDLC CGQNAYLHEH LLDGLNWQLI TGAISEITTI AEGIRTCKAS TLECNFPTWN 360 KTLQAFEVFG MNVGFLRTRL DKLASLASES KRGKEARHER EQAEIEMRTL EAKLLEVKRT 420 ISRLLEVETE TQNVSSEKLE DMLQQVAKAP W

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MAIVQEQKQS SKVLQIKRGR SPNKEEKLLK RKSSCLKQTT KNNMVNAKSI KSESSLKPKR  60
LKRATEESVY DTSQAQLSVL ERAKEIEASL APAFPTLIKV MLPSHVTGGF WLGLPKKFCC  120
VHLPKHDTMI ALEDESGEEY QTKYLADKVG LSGGWRGFSI AHKLVEGDVV VFHRVTPSKF  180
KVYIVRSKGS DESDCSLGLM NLGVCIKEMD TGDITTCEGA EYEDIRPISV ENPQNYNTIA  240
CNTKSSPIAD LSENDTGSLG SEVFDGIRLA ESVIPFKEVS SLENFNIIVD GFIINSEFPK  300
PVLAKYYDLC CGQNAYLHEH LLDGLNWQLI TGAISEITTI AEGIRTCKAS TLECNFPTWN  360
KTLQAFEVFG MNVGFLRTRL DKLASLASES KRGKEARHER EQAEIEMRTL EAKLLEVKRT  420
ISRLLEVETE TQNVSSEKLE DMLQQVAKAP W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-43	B3 family protein