PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0256821

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 446aa MW: 49675.1 Da PI: 8.0743

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0256821	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.2	6.5e-18	106	194	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 kv+ ps+v+ +l lpkkf+ +h + +++++++ledesgr+++ k+ ++ + l++GW++F a++L +gD+vvF+++ s+ RcHm_v2.0_Chr6g0256821 106 KVMRPSNVTGCFCLNLPKKFCGDHL-P-KQDTMIVLEDESGREFQTKY--LVGKAG--LSAGWRGFSIAHKLLAGDVVVFQRVTPSK 186 8999***************9995.3.37789***********..555444..9********************766566 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v ++r+ RcHm_v2.0_Chr6g0256821 187 F--KVYIVRS 194 6..8888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MSETQRLSMA IVPFQEHIPS CSPPKFNTER PLKEKEHVFR DKSSCLREIT NVVNANTMKS 60 ESDKLKRCKK STVESLYDTS EAQCSVMERA KKLEANLAPA FPRVAKVMRP SNVTGCFCLN 120 LPKKFCGDHL PKQDTMIVLE DESGREFQTK YLVGKAGLSA GWRGFSIAHK LLAGDVVVFQ 180 RVTPSKFKVY IVRSSGLDVA DCALGLVKLD AGIRQMDTAN FTACETAKVS IPREPIQKKN 240 TIACNTSLAP MSDRSGNDGE DFGSEVLDGI RLAESVIPFK EVKGMENFDV IINGLVLNSE 300 FSKYHLTKYY ELCCSQSSFL HKNILEGLNF KLVAGIISET INISDAIRAC KITTSECDFL 360 TWDKTLQASE TLGMNVGFLR TRLNKLASLA SESKRYSNLD GGRAEGEVKL LGKKETTTWF 420 DSEIETHNLL SERLKAMFEE VARAPW

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MSETQRLSMA IVPFQEHIPS CSPPKFNTER PLKEKEHVFR DKSSCLREIT NVVNANTMKS  60
ESDKLKRCKK STVESLYDTS EAQCSVMERA KKLEANLAPA FPRVAKVMRP SNVTGCFCLN  120
LPKKFCGDHL PKQDTMIVLE DESGREFQTK YLVGKAGLSA GWRGFSIAHK LLAGDVVVFQ  180
RVTPSKFKVY IVRSSGLDVA DCALGLVKLD AGIRQMDTAN FTACETAKVS IPREPIQKKN  240
TIACNTSLAP MSDRSGNDGE DFGSEVLDGI RLAESVIPFK EVKGMENFDV IINGLVLNSE  300
FSKYHLTKYY ELCCSQSSFL HKNILEGLNF KLVAGIISET INISDAIRAC KITTSECDFL  360
TWDKTLQASE TLGMNVGFLR TRLNKLASLA SESKRYSNLD GGRAEGEVKL LGKKETTTWF  420
DSEIETHNLL SERLKAMFEE VARAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-31	B3 family protein