PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0256811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 457aa    MW: 51450.2 Da    PI: 8.125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0256811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19101190299
                             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +kv++ps+v++  +l +p++f++eh+ k   +++++lede+g++++ k+ + k +    l++GW+ F  a++L egD++vF+  + +
  RcHm_v2.0_Chr6g0256811 101 VKVMMPSHVTRVFWLGIPRSFCREHMPK--DDTMIVLEDENGEEYQTKYLVAKEG----LSGGWRAFSAAHKLLEGDVLVFH--KVM 179
                             69***********************744..6789***************655555....9**********************..558 PP

                             EE..EEEEE-S CS
                      B3  89 efelvvkvfrk 99 
                               +l+v ++r+
  RcHm_v2.0_Chr6g0256811 180 PSKLKVYIVRS 190
                             89999999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    
MAVVEEHKES SSCPQPKLEK VRQPKNEDKD KPFCQNSSRL KQMTKNNVVS AKPMKSDSHK  60
PKTCKKAKVK SLYDTSKAQC SVLERANELA ANLAPEFPSL VKVMMPSHVT RVFWLGIPRS  120
FCREHMPKDD TMIVLEDENG EEYQTKYLVA KEGLSGGWRA FSAAHKLLEG DVLVFHKVMP  180
SKLKVYIVRS TGSDEVDCSL GLIKFDHGIR RIKATEVTAC ESSKNGKLEP ISVETLHENV  240
QKENTTACNT MSGPISNQYQ IDSEVLYSEV LDGIRLSESV IPFKEVSCIE NFKVTVSGSI  300
INAEISEHHL IKYYELCRSQ NSFLHEHILE RLNSSLVAGI ISETVNLSDA IRACKITTSE  360
CDFWTWDRTL QASEMLGMNV GFLRARLDQL ASLASKSKLC KEARLARDQA VKDMITLEAK  420
LVRAREVINR LNFEIESLNT SSKKLEAMFK EVAKAPW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-31B3 family protein