PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr6g0255231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 197aa MW: 21987.7 Da PI: 9.9736 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.7 | 1.7e-17 | 30 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L+elF++ r ++a++++++ +l +++ r+V++WF N+Ra+ek+ RcHm_v2.0_Chr6g0255231 30 STRWTPTTDQIRILNELFYNkvVRSLTAKQIQRICLQLkwygNIKSRNVYYWFGNHRAQEKQ 91 58*****************8789*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 81.5 | 1.1e-26 | 30 | 93 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRWtPt++Qi+iL+el++ + +r+ ++++iqri +L+ yG+i+++NV+yWF N++a e+qk+ RcHm_v2.0_Chr6g0255231 30 STRWTPTTDQIRILNELFYnKVVRSLTAKQIQRICLQLKWYGNIKSRNVYYWFGNHRAQEKQKK 93 79**************987578999*************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence |
MEPQTQQPTK DGGSNKAAGS SANMLCRWSS TRWTPTTDQI RILNELFYNK VVRSLTAKQI 60 QRICLQLKWY GNIKSRNVYY WFGNHRAQEK QKKKITSDVH VPMQRSWLVG NGNGTNWKPE 120 DQYINFGSSA SASASSACVM IAFNRKMGNY GGYGSMNTEI ETLPLFPIHG EDMKTTSEGG 180 GGYNGGSRIS LELSLNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 2e-26 | WOX family protein |