PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0080541
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 365aa    MW: 41527.8 Da    PI: 6.786
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0080541genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-1066113255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  RcHm_v2.0_Chr5g0080541  66 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIKLRK 113
                             789996.566899****999......44*************************97 PP
2B389.33.1e-28192284185
                             EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                             f+k+ltpsdv+k++rlv+pkk+a ++        +++   +++l+++d+  r W+++++y+k+s+++v+t+GW++Fvk+n Lk++D+
  RcHm_v2.0_Chr5g0080541 192 FQKELTPSDVGKLNRLVIPKKYAVKYfpcicetmEENGVDDVELVFYDKVMRAWKFRYCYWKSSQSFVFTRGWNRFVKENSLKANDV 278
                             99*****************************99855555899********************************************* PP

                             EEEEE- CS
                      B3  80 vvFkld 85 
                             ++F+  
  RcHm_v2.0_Chr5g0080541 279 ITFYTC 284
                             ***933 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MPILLYSLSF PKFTMEDEAS TMINSSALKN NNSVVVPGET SGSNDTNFEL RPTKRLRHDN  60
DVSLAKFKGV VPQQNGHWGA QIYANHQRIW LGTFKSENEA AMAYDSAAIK LRKGNESHRN  120
FPWTNMTIQE PDFQSHLTTE EVIKMIRDGS YPSKFGAFVR SQTQSQSEEV GKGTPSQITV  180
HGNGQVLCRQ LFQKELTPSD VGKLNRLVIP KKYAVKYFPC ICETMEENGV DDVELVFYDK  240
VMRAWKFRYC YWKSSQSFVF TRGWNRFVKE NSLKANDVIT FYTCESAELI RDESGEVTTT  300
FSLIDVMHGE AENNKCLVEK EGKLELHLSG NSSYKLQEGE CKHGEENKTS MVEEKGVRLF  360
GVNIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein