PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0074411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 716aa MW: 77262.7 Da PI: 5.8681

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0074411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.8	4e-32	289	346	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k RcHm_v2.0_Chr5g0074411 289 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 346 7**************************************.*************85 PP
2	WRKY	102.8	1.9e-32	505	563	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ RcHm_v2.0_Chr5g0074411 505 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 563 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MAGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSSNKAEEF WSREGNTNGK 60 NLSQENGTGD EITAMGSFSE AGFNAPRLNT ESIRSSDLSL NSDVRSPYLT IPPGLSPTTL 120 LDSPVFLSNS LAQPSPTTGK FPFVSNGHAR NSTLMTEAAD KANFFEDMNT SFAFKPLGES 180 GSFFLGPTSK QSFPSIEVSV HSENSSQSME PTKVQNQNAN NFQLQPDFSR TSTEKDNGAN 240 TVSADPRAFD TVGGSTEHSP PLDEQPEEEG DQRGGGDSMA AAGGGTPSED GYNWRKYGQK 300 QVKGSEYPRS YYKCTHPNCQ VKKKVERSHE GHITEIIYKG AHNHPKPPPN RRSGAIGSSN 360 PLIDMRSDVL EQGGPQTGAD GDLVWASAQK ATGGAPDWKH DNLEVTSSAS AGPDYGQQST 420 SMQAQTGAHL ESGDVVDASS TFSNDEDEDD RGTHGSVSLA YDGEGDESES KRRKIEAYAT 480 EMSGATRAIR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTNAGCTVRK 540 HVERASHDLK SVITTYEGKH NHDVPAARNS SHVNSGPSGN MSGQASGSAA QTHPHRPEPS 600 QVHSNMARFE RPMSMGSFSL AGRQQLGPPQ GFSFGMNQPG LANLAMAGFS PGQHKVPVLP 660 VHHPYFAQQR QVSEMGFMLP KGEPKVEPMS EPGLNMNNAS SVYQQLMSRL PLGPQM

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MAGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSSNKAEEF WSREGNTNGK  60
NLSQENGTGD EITAMGSFSE AGFNAPRLNT ESIRSSDLSL NSDVRSPYLT IPPGLSPTTL  120
LDSPVFLSNS LAQPSPTTGK FPFVSNGHAR NSTLMTEAAD KANFFEDMNT SFAFKPLGES  180
GSFFLGPTSK QSFPSIEVSV HSENSSQSME PTKVQNQNAN NFQLQPDFSR TSTEKDNGAN  240
TVSADPRAFD TVGGSTEHSP PLDEQPEEEG DQRGGGDSMA AAGGGTPSED GYNWRKYGQK  300
QVKGSEYPRS YYKCTHPNCQ VKKKVERSHE GHITEIIYKG AHNHPKPPPN RRSGAIGSSN  360
PLIDMRSDVL EQGGPQTGAD GDLVWASAQK ATGGAPDWKH DNLEVTSSAS AGPDYGQQST  420
SMQAQTGAHL ESGDVVDASS TFSNDEDEDD RGTHGSVSLA YDGEGDESES KRRKIEAYAT  480
EMSGATRAIR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTNAGCTVRK  540
HVERASHDLK SVITTYEGKH NHDVPAARNS SHVNSGPSGN MSGQASGSAA QTHPHRPEPS  600
QVHSNMARFE RPMSMGSFSL AGRQQLGPPQ GFSFGMNQPG LANLAMAGFS PGQHKVPVLP  660
VHHPYFAQQR QVSEMGFMLP KGEPKVEPMS EPGLNMNNAS SVYQQLMSRL PLGPQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	0.0	WRKY family protein