PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0073681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 295aa    MW: 33588.2 Da    PI: 10.0301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0073681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.7e-19134222196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+k +++s+v +  +l lp +f+e+h ++k ++ +l+lede+g++++ k+i ++++    l++GW++F+ +++L++gD +vF+l++ 
  RcHm_v2.0_Chr5g0073681 134 FVKSMVRSHVYSCFWLGLPSNFCETH-LPKSSDSELILEDEDGNVYDAKYIAKRTG----LSGGWRGFALEHKLDDGDALVFELVEP 215
                             89*********************999.45567779***************655555....***********************9987 PP

                             SEE..EEEE CS
                      B3  88 sefelvvkv 96 
                             ++f  ++ +
  RcHm_v2.0_Chr5g0073681 216 TRF--KIYI 222
                             777..4444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MVAAYEEARN KRLEENKKKF QDLGITQVSK TLSDLTASEK KPQQRAWKPK AKNTAFEVEP  60
RRSTRQRNPI QTYVDDVDIG LPTRKRLRSS SSSFGSYLAR PLEECRMASY EERSAAFKAA  120
ERLQESLQSE NPSFVKSMVR SHVYSCFWLG LPSNFCETHL PKSSDSELIL EDEDGNVYDA  180
KYIAKRTGLS GGWRGFALEH KLDDGDALVF ELVEPTRFKI YIVKVTNQEH CKKDKVKSAG  240
KPSKAAKKPD QDPNKKQRSK KATTAEIIDM KTPPELLPES PKSEAVLPYR LRKRA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-72B3 family protein