PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0072401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23399.6 Da PI: 8.1442 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.9 | 5.5e-41 | 25 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrrkCa++C++ pyf ++p+kf +vhk+FGasnv+kll +++e++r da++slvyeA+ r+rdPvyG+vgvi++lqq++ RcHm_v2.0_Chr5g0072401 25 PCAACKLLRRKCAEECPFFPYFSPHEPHKFSAVHKVFGASNVSKLLMEVSENQRADAANSLVYEANLRLRDPVYGCVGVISTLQQKI 111 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 ++l++el+++++e RcHm_v2.0_Chr5g0072401 112 QSLQTELHAVRTE 124 ********99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MVMMSRQNNS FGQLPGMTTL NTITPCAACK LLRRKCAEEC PFFPYFSPHE PHKFSAVHKV 60 FGASNVSKLL MEVSENQRAD AANSLVYEAN LRLRDPVYGC VGVISTLQQK IQSLQTELHA 120 VRTEMLRCKY KEAPSQIVSS GDHIHPHHAA AALVSSGMVS IAAPPQSILT SPPAAPPSSV 180 VFSSSSSTST STSSLYTPST NTTGFSSLSS DNLPYFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-69 | LBD family protein |