PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT2G30340.1

Common Name

ASL10, LBD13, T9D9.15

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

LBD

Protein Properties

Length: 268aa MW: 29090.7 Da PI: 8.1465

Description

LOB domain-containing protein 13

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT2G30340.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el +++ AT2G30340.1 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVR 149 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e AT2G30340.1 150 TE 151 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.189	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-40	52	149	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008150	Biological Process	biological_process
GO:0016020	Cellular Component	membrane
GO:0003674	Molecular Function	molecular_function

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0009025	anatomy	vascular leaf

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSREREGFGE YYETVKKIKK DPAFETTTDH AVMGIRRHVA VPPGTTLNTV TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV GESQRGDAAN SLVYEANLRL 120 RDPIYGCMGA ISALQHHIQS LQSELTTVRT EILRHKYQEA TTITSLQNNF NSTTTTSSVS 180 CDQHALASAI LLPPPPPPPP TPRPPRLLSS QPAPPPTPPV SLPSPSMVVS SSSSSNSSAT 240 NSMYNPPPSS TAGYSNSLSS DNNVHYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-41	45	163	4	122	LOB family transfactor Ramosa2.1
5ly0_B	6e-41	45	163	4	122	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.12242	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	186504243	0.0
Genevisible	255873_at	0.0
Expression Atlas	AT2G30340	-
AtGenExpress	AT2G30340	-
ATTED-II	AT2G30340	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Function -- GeneRIF ? help Back to Top
positively regulates lateral root formation [PMID: 30627888]

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT2G30340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Interaction ? help Back to Top
Source	Intact With
BioGRID	AT1G31320, AT1G65620
IntAct	Search Q9AT61

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT2G30340

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473843	0.0	AB473843.1 Arabidopsis thaliana ASL10 mRNA for ASYMMETRIC LEAVES2-like 10 protein, complete cds.
GenBank	AF447888	0.0	AF447888.1 Arabidopsis thaliana LOB DOMAIN 13 (LBD13) mRNA, complete cds.
GenBank	BT026052	0.0	BT026052.1 Arabidopsis thaliana At2g30340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850141.1	0.0	LOB domain-containing protein 13
Swissprot	Q9AT61	0.0	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A178VTE1	0.0	A0A178VTE1_ARATH; LBD13
STRING	AT2G30340.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81
Representative plant	OGRP60	16	318

Link Out ? help Back to Top
Phytozome	AT2G30340.1
Entrez Gene	817584
iHOP	AT2G30340
wikigenes	AT2G30340

Publications ? help Back to Top
Iwakawa H, et al. The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant Cell Physiol., 2002. 43(5): p. 467-78 [PMID:12040093] Shuai B,Reynaga-Peña CG,Springer PS The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol., 2002. 129(2): p. 747-61 [PMID:12068116] Xiao YL,Malik M,Whitelaw CA,Town CD Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis. Plant Physiol., 2002. 130(4): p. 2118-28 [PMID:12481096] Mitra SK,Gantt JA,Ruby JF,Clouse SD,Goshe MB Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. J. Proteome Res., 2007. 6(5): p. 1933-50 [PMID:17432890] Matsumura Y,Iwakawa H,Machida Y,Machida C Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members. Plant J., 2009. 58(3): p. 525-37 [PMID:19154202] Arabidopsis Interactome Mapping Consortium Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]