PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065671
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 686aa    MW: 77894 Da    PI: 5.1157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.2e-1133126832374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL++cA+av+s d+++a++ L+ +++++sp+gd +qRla+y++++L++rl+  vs+  +++ + +  + + +  l+a++++  ++
  RcHm_v2.0_Chr5g0065671 312 QTLLTQCAQAVASYDKRNANEQLKLIRQHSSPYGDGTQRLAHYLANGLEERLTAAVSSYKQSV-CFSRGNLSAAVILKAYRTYITAC 397
                             689***************************************************666655555.444545779999*********** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P+ k+s++ aNq+I + +e+++r+HiiDf+i +G QWp+L+qaL++Rp+gpp++RiTg++ p+sg   +e leetg+rL++++++++
  RcHm_v2.0_Chr5g0065671 398 PFKKMSNFYANQTIRKLAEEKTRLHIIDFGILYGYQWPCLIQALSKRPGGPPMVRITGIEFPQSGfrPSEGLEETGRRLQNYCKRVN 484
                             ****************************************************************9********************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             vpfe+++ +ak++e++++e+++v+++E+++Vn+ ++l++l+ ++  l+s+rd+vLkl+++++P+v+++   +  +n++ F +rf ea
  RcHm_v2.0_Chr5g0065671 485 VPFEYTA-IAKNWETIQYEDIKVERDEVTVVNCLYRLKNLP-DDEVLDSPRDTVLKLIRRINPDVFIHGIVNGTYNAPFFDTRFREA 569
                             *******.7********************************.55567777************************************* PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                             l+++s+lfd++e++lpre+ +r   E+e++gr++ nvvaceg++r er et+++W++r  +aGFk++pl+++  k +k++++  + +
  RcHm_v2.0_Chr5g0065671 570 LYHFSSLFDMYEETLPREDPDRLLFEQEVFGRDLINVVACEGSMRLERPETYKQWQMRNIRAGFKQLPLDQDLLKRIKTMVKSEYHK 656
                             ***********************************************************************************9988 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              + v+e+ ++++ gWk+r + ++S+W+
  RcHm_v2.0_Chr5g0065671 657 DFVVDEDGKWVLHGWKGRIIHAISCWK 683
                             8*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    
MDTLLEEFPN SMNKFAFDQN SIPSFADQNP ADQFEPNHEF TNPSFSPANS YPYTDFSSSS  60
SGLSSEGVYS PDTSDSNTIL RFISEMLMEE EDLENKPCML QDCLALRAAE KSLYDVLVQE  120
DPSSISQNLT STYQNVGSPD DGSNHSSSSS IAGSNWVDSD FNYIQEVLDT VVPNPFVSNG  180
KGGVTDLEGN SSISADARRL SDDVKFSPDK DESDESRNGS RGKKNRYRED GDYLDEERSY  240
KQSAVYADEI EPEEMFDQVL LCQGHKSSSS PQVSELKDGN GKLQRNGKPK GSKAKKTGKK  300
KAGDNKEVVD LQTLLTQCAQ AVASYDKRNA NEQLKLIRQH SSPYGDGTQR LAHYLANGLE  360
ERLTAAVSSY KQSVCFSRGN LSAAVILKAY RTYITACPFK KMSNFYANQT IRKLAEEKTR  420
LHIIDFGILY GYQWPCLIQA LSKRPGGPPM VRITGIEFPQ SGFRPSEGLE ETGRRLQNYC  480
KRVNVPFEYT AIAKNWETIQ YEDIKVERDE VTVVNCLYRL KNLPDDEVLD SPRDTVLKLI  540
RRINPDVFIH GIVNGTYNAP FFDTRFREAL YHFSSLFDMY EETLPREDPD RLLFEQEVFG  600
RDLINVVACE GSMRLERPET YKQWQMRNIR AGFKQLPLDQ DLLKRIKTMV KSEYHKDFVV  660
DEDGKWVLHG WKGRIIHAIS CWKSAW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-173GRAS family protein