PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 690aa    MW: 78269.6 Da    PI: 5.8579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.11.6e-1173186883374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             + L++cA+av++ d+  a++lL++++++ +p+gd++qRla+yf+ +L+arla+  +  y+ l + +ts    +e l+a+++   ++P
  RcHm_v2.0_Chr5g0065601 318 TMLTQCAQAVANFDQLTASELLKQIRQHTTPHGDATQRLAHYFADGLHARLAGAKTPSYSPLVSVQTS---AAEILKAYQVVITACP 401
                             689**************************************************999999999999998...9*************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                             + k+sh+ aN++I++ +e+++r+HiiDf+is+G+QWp+L+q L++Rp+gpp+lRiT+++ p++g   +e++eetg+rL+k+A++++v
  RcHm_v2.0_Chr5g0065601 402 FKKMSHFFANRTIMKLTEKATRLHIIDFGISYGFQWPCLIQRLSQRPGGPPKLRITAIELPQPGfrPTERVEETGRRLEKYAKRFDV 488
                             ***************************************************************9*********************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pfe+nv +a+++e++++e++++++ E ++Vn+ ++l +++de+v ++s+rd+vLkl++++sP+++++   +  +n++ Fl+rf eal
  RcHm_v2.0_Chr5g0065601 489 PFEYNV-IAQKWETIRIEDIKIDRTELIVVNCLHRLRNIPDETVMVNSPRDAVLKLIRKISPDIFIHGVVNGTYNAPFFLTRFREAL 574
                             *****9.7******************************************************************************* PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr.kvksd 347
                              ++ +lfd+lea+++re+e+r + E+++ gr+i nvvaceg er+er et+++W+ r  +aGFk++pl++k  k++k++ + +++ +
  RcHm_v2.0_Chr5g0065601 575 LHFYSLFDMLEATISREDEQRLMFEQAIYGRDIINVVACEGLERVERPETYRQWQVRNLRAGFKQLPLDQKLLKEVKTMSKvMCYHN 661
                             ******************************************************************************998345589 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              +rv+e+ +++++gWk+r+++++S+W+
  RcHm_v2.0_Chr5g0065601 662 DFRVDEDGHWMLQGWKGRTIMALSFWK 688
                             9*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    
MERFKFDHGP VSVCPNPNLV NVNGFKINHE STNPVLLASK SDLSSDSSNE GSEVDGLDIN  60
DCNHPVLKYI SDILLEEDLE GKPCMLQDCL ALQAAEKSFY DVLNQKDPPL PNQPSSFVHQ  120
SSESSDDDSP QSFRNSNGSF AVKTDWVWDP ECSPVQSSLF ESWLNTRLVS DSLSEMQSLG  180
NFGGVGEASK FLSNPKLEMF DLERFQLMPQ GSVASESGAE GYNSTNGSKG KKTHQREDSH  240
FPEEERSNKQ SAAVGDDFEP QEMFDEVLLC AENHDAMLCA DYESLKTEGD GKLQRNKQSK  300
GLKAKRQSDI GEVVDLCTML TQCAQAVANF DQLTASELLK QIRQHTTPHG DATQRLAHYF  360
ADGLHARLAG AKTPSYSPLV SVQTSAAEIL KAYQVVITAC PFKKMSHFFA NRTIMKLTEK  420
ATRLHIIDFG ISYGFQWPCL IQRLSQRPGG PPKLRITAIE LPQPGFRPTE RVEETGRRLE  480
KYAKRFDVPF EYNVIAQKWE TIRIEDIKID RTELIVVNCL HRLRNIPDET VMVNSPRDAV  540
LKLIRKISPD IFIHGVVNGT YNAPFFLTRF REALLHFYSL FDMLEATISR EDEQRLMFEQ  600
AIYGRDIINV VACEGLERVE RPETYRQWQV RNLRAGFKQL PLDQKLLKEV KTMSKVMCYH  660
NDFRVDEDGH WMLQGWKGRT IMALSFWKPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein