PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0065591
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 698aa    MW: 79450.5 Da    PI: 5.9368
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0065591genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.64.6e-1103266963374
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             + L++cA+av+s d+++a++lL+++++++sp+gd++qRla+yf+ +L+ rla++ +  y+ +++ + s   ++e l+++++++  +P
  RcHm_v2.0_Chr5g0065591 326 TMLTQCAQAVASYDQRNASELLKQIRQHSSPYGDATQRLAHYFADGLEVRLAGTRTPSYSPIASMQIS---TVEILKSYQTYVTSTP 409
                             689**************************************************999999999888888...8*************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                             + ++ h+ aN +I++ +e+++ +HiiDf+ s+G+QWp+L+q L++R +gpp+lRiT+++ p++g   +e++eetg+rLak+ +++ v
  RcHm_v2.0_Chr5g0065591 410 LKTVPHFFANMTIMKLAEKATSLHIIDFGTSYGFQWPSLIQCLSERHGGPPKLRITTIELPQPGfrPTERVEETGRRLAKYSARFSV 496
                             ***************************************************************9*********************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                             pfef+v +a+++e++ +++L+++++E ++Vn+ ++l++++d ++  +s+rd+vLkl+k+++P+++++   +  +ns+ Fl+rf +al
  RcHm_v2.0_Chr5g0065591 497 PFEFHV-IAQKWETVGFDDLKIDRNELIVVNCLHRLKHVPDVTMMGNSPRDAVLKLIKKINPEIFIHGVVNGAYNSPFFLTRFKQAL 582
                             *****9.7******************************************************************************* PP

                    GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
                              +y alf+ +ea++p e+++r + Er+  gr+i+nvvaceg e +er et++kW+ r  +aGFk++pl+++  k++k++ + ++  +
  RcHm_v2.0_Chr5g0065591 583 FHYDALFNVFEATIPCEDQQRLFFERAGYGRDIMNVVACEGLEIVERPETYKKWQVRNVRAGFKQLPLDQELLKKVKTMSKSMGyHN 669
                             ***********************************************************************************9999 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++++e+++++++gWk+r L+++S+W+
  RcHm_v2.0_Chr5g0065591 670 DFSIDEDEQWMLQGWKGRVLMALSFWK 696
                             9*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
MDTLLKRYSV PMETFVFDQG SISNYSYPDH GNGFEVNHEL INPLFLPTNL DLLSDSSTSL  60
KPTSDRNGGD ISDYNNPVLK YISDILLEED IEDKPCMLQD CLALQAAEKS FYDVLNPKDA  120
TVLNQSFENS DDYRESCDSN GGSIFGKTYG VADPSESCHF QSSLVECLSD TSLVSDSSSK  180
LQSPGNFGRV EEANKFHENF EVIDAERYQL MLQGPQTLIG SNLVSEQQSD RYNSANRSEA  240
KKIRQRQDAH CLEEWRSNKQ SVAYFTDDSE PQEMFDKALL FQGVNHEAEC SAHHDSFNEG  300
SGQCKVSKPA RSKRQNKKEK VVDLCTMLTQ CAQAVASYDQ RNASELLKQI RQHSSPYGDA  360
TQRLAHYFAD GLEVRLAGTR TPSYSPIASM QISTVEILKS YQTYVTSTPL KTVPHFFANM  420
TIMKLAEKAT SLHIIDFGTS YGFQWPSLIQ CLSERHGGPP KLRITTIELP QPGFRPTERV  480
EETGRRLAKY SARFSVPFEF HVIAQKWETV GFDDLKIDRN ELIVVNCLHR LKHVPDVTMM  540
GNSPRDAVLK LIKKINPEIF IHGVVNGAYN SPFFLTRFKQ ALFHYDALFN VFEATIPCED  600
QQRLFFERAG YGRDIMNVVA CEGLEIVERP ETYKKWQVRN VRAGFKQLPL DQELLKKVKT  660
MSKSMGYHND FSIDEDEQWM LQGWKGRVLM ALSFWKRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-174GRAS family protein