PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0062001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WOX | ||||||||
Protein Properties | Length: 247aa MW: 28111.9 Da PI: 8.4828 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.6e-21 | 17 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ RcHm_v2.0_Chr5g0062001 17 SRWCPTPEQLMILEEMYRAgVRTPNASQIQQITAQLsfygKIEGKNVFYWFQNHKARDRQ 76 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 120.7 | 5.9e-39 | 15 | 77 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk RcHm_v2.0_Chr5g0062001 15 SSSRWCPTPEQLMILEEMYRAGVRTPNASQIQQITAQLSFYGKIEGKNVFYWFQNHKARDRQK 77 689***********************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MSPAANFSAS FSSSSSSRWC PTPEQLMILE EMYRAGVRTP NASQIQQITA QLSFYGKIEG 60 KNVFYWFQNH KARDRQKLRR KLCKQLQLQQ QQLYHNYYHC QHHHQQQLML NQQSLLGYLD 120 QSPSASSVLH QPLCCHHHNL SAGFLPQVGV EDALMNYTRK VHEIPAAAER LEMEKSVLNM 180 YGHDWMMTTK KTMDVGPPAS PACCTRSAAA ATPRPLKTLQ LFPIKSPNLR SEDHEEEEST 240 STPSNPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-34 | WOX family protein |