PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0048841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25575.6 Da PI: 8.328 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.7 | 2.3e-23 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 lp+G+rFhPtd+el+++yL+ +++ ++ +++++++ + y ePw + k ++ek +yfF++r++ ++t kr r++ RcHm_v2.0_Chr5g0048841 8 LPVGVRFHPTDHELLDYYLRTRIAMGDHFHSDFVADCpHFYGDnEPWVVWQiygggesKKVEDEKTLYFFTHRRRLSPTTKRFDRKV 94 799*******************99999777799999966664349**99644677764322356688******************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+W+ + + +ev + +g ++glk+ + + g +++ ++ W+m+e++l RcHm_v2.0_Chr5g0048841 95 GSGTWSGQNS-REVED-DGVVIGLKREFRYEGGCDSR-HNDAWLMQEFQL 141 *****98755.99999.9***********98665555.899*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MAIRSSGLPV GVRFHPTDHE LLDYYLRTRI AMGDHFHSDF VADCPHFYGD NEPWVVWQIY 60 GGGESKKVED EKTLYFFTHR RRLSPTTKRF DRKVGSGTWS GQNSREVEDD GVVIGLKREF 120 RYEGGCDSRH NDAWLMQEFQ LINDDSDFVL CTLRKNPRKA PPTPTAQGSN VVENTRVNDK 180 KRKSIVDQPR KPKSKKQKKE ESCHQEQEGS SIVDQMKVGE AN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 199 | KKRKSIVDQPRKPKSKKQKK |
2 | 182 | 197 | RKSIVDQPRKPKSKKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 4e-18 | NAC family protein |