PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0046601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29554.8 Da PI: 7.0611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.2 | 4.2e-46 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 + GfrF Pt+eelv++yL +k+e+k+ ++ +vi+++diy++ePw+Lpk +++++++w+fF++r++++ +g r+nr+t+sgyW RcHm_v2.0_Chr5g0046601 6 TTGFRFYPTEEELVSFYLLNKLESKHqDSIRRVIPDLDIYSIEPWELPKyaaeLCREDTEQWFFFTPRQQREVQGGRPNRTTASGYW 92 68*********************9994555677***************645543344667*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ RcHm_v2.0_Chr5g0046601 93 KATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 137 *******************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MDQALTTGFR FYPTEEELVS FYLLNKLESK HQDSIRRVIP DLDIYSIEPW ELPKYAAELC 60 REDTEQWFFF TPRQQREVQG GRPNRTTASG YWKATGSPGY VYSSDNRVIG VKKTMVFYKG 120 KAPTGRKTKW KMNEYRAIEE TAAPSATTSN SASTAIIPKL RHEFRLCRVY IVSGSSRAFD 180 RRPLEGSRDT SHRRSDLTRA SASSSHQAAM VEEKTSSSSD THSNSGDLAD FQAGNNNDWE 240 MNDDLQQPLW EWEQLILL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-86 | NAC family protein |