PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0046581
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 120aa    MW: 13754.3 Da    PI: 9.8192
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0046581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.75.5e-09100120222
                             --SS-EEEEEEE--TT-SS-E CS
                    WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                              Dg+ WrKYGqKe+ g+++pr
  RcHm_v2.0_Chr5g0046581 100 GDGHIWRKYGQKEILGAKYPR 120
                             59******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    
MEIFCGLQKV GTGFLCLYAF LYCSLFPLNA CNENEIVNRH SKALENKEMH RMKLTSNILM  60
LIFTVIFIAK IPDFGLRIAE RLSLWTKQVR VSSGNGMPLG DGHIWRKYGQ KEILGAKYPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-10WRKY family protein