PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0045711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 283aa MW: 32778.6 Da PI: 4.8309 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.8 | 7.5e-22 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 lp+G+rF Ptd+el+++yL+ +++ + +++++++ + y + ePw + k ++e+ +yfF++r++ ++t kr r++ RcHm_v2.0_Chr5g0045711 8 LPVGVRFLPTDQELLDYYLRTRIAMGDQFRTDFVADCpHFYgDKEPWVVWQiygggesKKVEDENTLYFFTHRRRLSPTAKRFDRKV 94 799*******************98888555589999966662469**99644677764222355678******************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+W+ + + +ev + +g ++glk+ + + g ++++ W+m+e++l RcHm_v2.0_Chr5g0045711 95 GSGTWSGQYS-REVED-DGVVIGLKRDFRYE-GGCDESHNDAWLMQEFQL 141 *****98765.99999.9***********97.66666689********98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence |
MAILSNKLPV GVRFLPTDQE LLDYYLRTRI AMGDQFRTDF VADCPHFYGD KEPWVVWQIY 60 GGGESKKVED ENTLYFFTHR RRLSPTAKRF DRKVGSGTWS GQYSREVEDD GVVIGLKRDF 120 RYEGGCDESH NDAWLMQEFQ LDDDSDLVLC SLRKNPRKGS NTRVVNDKKR KSIPQPRKPK 180 SKRQKKEGTC HQEQGSSSTV HPNYELPYPQ MDVHPNYELP YPQMDDLDFY LPEIYPDLFV 240 DDGRDLFTMD DLLGETPVWE EGNNFNLGEE GNNFNLVTGG PLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 184 | RKSIPQPRKPKSKRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 7e-15 | NAC family protein |