PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0041261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 226aa    MW: 24393.9 Da    PI: 7.9406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0041261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-193180255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr ++ +g+++AeIrdp++   + r++lg+f +ae+Aa+a++aa++ l+g
  RcHm_v2.0_Chr5g0041261 31 KYRGVRKRP-WGKYAAEIRDPYK---KSRVWLGTFESAEDAARAYDAAARVLRG 80
                            8********.**********765...6***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MRRGRGAAAV AARANGPPAE PNGSRPIKEV KYRGVRKRPW GKYAAEIRDP YKKSRVWLGT  60
FESAEDAARA YDAAARVLRG PKAKTNFPTY SNHLCYNNPA DPNLDSKLFG SGYGFHDDSP  120
VGPARPASSS LSSTVESFSG PRAAPQRSSA TIVAESSRRK QPRTPPMDPE DCHSDCDSSS  180
SVVEDDGEFA SSFRKPLDFD LNFPPLDEVD AAGGDGQDLG WTALCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-34ERF family protein