PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0033041
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 287aa    MW: 32714.4 Da    PI: 9.9674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0033041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-163801799
                            E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                      B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                            ++p kf+++h ++  +  + +l+ +sg++ +v+l  +++ ++ ++   GW +Fv++++L+ gDf+vF +dg+s+f  +vk++++
  RcHm_v2.0_Chr5g0033041  3 RIPPKFTKNHIQP--SLCKCVLRGLSGQRCDVEL--ERRENGlFFHNHGWHRFVNDHRLQFGDFLVFCYDGQSKF--KVKIYDR 80
                            79*****888544..4458***************..88888868888***********************99999..9999987 PP
2B346.56.7e-151762641299
                             HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                      B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                             ++ r+++pk+ a + g+   ++kt+ +ed++gr W  kl       ++k ++  +++GW e  kan++ +gD+vvF+++++s    +
  RcHm_v2.0_Chr5g0033041 176 SRYRMTIPKDLAVTKGLM--SKKTIEIEDSTGRLWPAKLVSltskeNNKTCGLAMSTGWGECSKANKIAVGDTVVFEFVKQSVI--R 258
                             4568********999887..5679***************7778888888899*************************9875555..7 PP

                             EEEE-S CS
                      B3  94 vkvfrk 99 
                             +++frk
  RcHm_v2.0_Chr5g0033041 259 LHIFRK 264
                             777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MRRIPPKFTK NHIQPSLCKC VLRGLSGQRC DVELERRENG LFFHNHGWHR FVNDHRLQFG  60
DFLVFCYDGQ SKFKVKIYDR TCCEIDVEVA KRRNGLPAAP SANEGYQLAW VKDEIVDLKT  120
EYYNRDDTEN ADKRRRNNHM SGKPPRVEDG KETSTGSIIF KSEYSCFKAT LTTRCSRYRM  180
TIPKDLAVTK GLMSKKTIEI EDSTGRLWPA KLVSLTSKEN NKTCGLAMST GWGECSKANK  240
IAVGDTVVFE FVKQSVIRLH IFRKGLGTRG GNNRPNSVVL DAPNIKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein