PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0033031
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 224aa    MW: 25694.1 Da    PI: 9.2679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0033031genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-143593998
                            EETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3 39 edesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              +sg+ W+v+l  +++ ++ ++  +GW+ Fvk++ L++gDf+vF++dg+s+f   v++++
  RcHm_v2.0_Chr5g0033031  3 ICPSGKCWNVEL--ERTENGlFFHNDGWQTFVKDHLLQVGDFLVFRYDGESNF--EVTLYD 59
                            5589********..99999978888************************9999..666666 PP
2B331.92.4e-101662242982
                             -..--SEEEEEETTS-EEEEEE........EEETTE.....EEE-TTHHHHHHHHT--TT-EEEE CS
                      B3  29 kkeesktltledesgrsWevkliy......rkksgr.....yvltkGWkeFvkangLkegDfvvF 82 
                                 +kt+ ++d++grsW  kl        +    r       +++GW+e +kan++ +gD + F
  RcHm_v2.0_Chr5g0033031 166 M--HKKTVEIQDPTGRSWPTKLVTvtskqqN----RwsndrLDMSTGWSECCKANKISAGDNCHF 224
                             3..4569***************766755541....2344559999****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MLICPSGKCW NVELERTENG LFFHNDGWQT FVKDHLLQVG DFLVFRYDGE SNFEVTLYDR  60
TCCEKDVKVP KRRRGRPAAN ERNSAQVINL ETENYNKKAE KKTSIDGRRS RNYVMPGKGI  120
RCEGVNQTSN GSILFKSENS YLKLTLKRKA QQYVVAIEVA ITEGLMHKKT VEIQDPTGRS  180
WPTKLVTVTS KQQNRWSNDR LDMSTGWSEC CKANKISAGD NCHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-13B3 family protein