PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0024171
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 539aa    MW: 60548.9 Da    PI: 4.6581
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0024171genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.32.3e-1091615321374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalklf 84 
                             lv+ Ll+cAeav  +d++la++lL+++   +sp gd++qR+  +f  +L++rl+  +  +l  +++  + + +    +e+l a++l+
  RcHm_v2.0_Chr5g0024171 161 LVHMLLACAEAVGCRDTRLADSLLTQIWASVSPFGDSLQRVSYCFSMGLKSRLSLlHNVNLNGTFNNDTMDVSLiaREEKLEAFQLL 247
                             689**************************************************995555666666666666555888999******* PP

                    GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAe 170
                             ++++P++ f++++aN+aI +a++g+e +HiiD+++++ lQWp+Ll++LasRpegpp +lRiTg+++   ++  el +  + L + A+
  RcHm_v2.0_Chr5g0024171 248 HQTTPYIAFGFMVANEAICQAAQGKESLHIIDLGMEHTLQWPSLLRTLASRPEGPPkKLRITGLVE--DHNVLELDAGMRVLVEEAR 332
                             ****************************************************988889********..5699999999********* PP

                    GRAS 171 elgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                             +lg+p+efn++ +  + + l+ e+L++++gEal Vn++++lh  ++es  + +   ++L+++k+l P v+++veq+a+hn++ Fl r
  RcHm_v2.0_Chr5g0024171 333 SLGIPIEFNMISEPvKPSLLTKENLDLREGEALCVNSIMHLHMYVKESRGSLK---AILQAFKKLGPSVLTLVEQDANHNGPFFLGR 416
                             **********744358999************************9977776666...9****************************** PP

                    GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                             fle+l++ysa+fdsle++lpr+s +r+k+Er  ++ ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+   ++qa+++l+ 
  RcHm_v2.0_Chr5g0024171 417 FLESLHFYSAIFDSLEVSLPRNSPQRMKIERLHFADEIRNIVAFEGLNRVERHERADQWRRQLGRAGFQVMGLK--CTSQARMMLSV 501
                             **********************************************************************9996..679******** PP

                    GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  RcHm_v2.0_Chr5g0024171 502 YGCDGYSLASEKGCLLLGWKGRPIMLASAWQ 532
                             ******************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MEDFNAWLSF PIHGSLNHDL AIRRFCPARL EQEQGGGEWE EILNEIQFCS PSDDSTSTPC  60
LPASDVDEFV DSFINMDHCK DIDDDYQSLE KQQKSFDYFQ DGIQTFSMVD DLYGDVMMMM  120
EGDDQMEMCG SVEDFGVVDD QTTMVPSVEA VSHGVDQGLH LVHMLLACAE AVGCRDTRLA  180
DSLLTQIWAS VSPFGDSLQR VSYCFSMGLK SRLSLLHNVN LNGTFNNDTM DVSLIAREEK  240
LEAFQLLHQT TPYIAFGFMV ANEAICQAAQ GKESLHIIDL GMEHTLQWPS LLRTLASRPE  300
GPPKKLRITG LVEDHNVLEL DAGMRVLVEE ARSLGIPIEF NMISEPVKPS LLTKENLDLR  360
EGEALCVNSI MHLHMYVKES RGSLKAILQA FKKLGPSVLT LVEQDANHNG PFFLGRFLES  420
LHFYSAIFDS LEVSLPRNSP QRMKIERLHF ADEIRNIVAF EGLNRVERHE RADQWRRQLG  480
RAGFQVMGLK CTSQARMMLS VYGCDGYSLA SEKGCLLLGW KGRPIMLASA WQVNNASNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-79GRAS family protein