PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0009381
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 720aa    MW: 79108.1 Da    PI: 6.4768
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0009381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.3e-24144245199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+
  RcHm_v2.0_Chr5g0009381 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVL 229
                             99****************************963.3445679********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   + +++el+++v+r+
  RcHm_v2.0_Chr5g0009381 230 FL--RGEDGELRLGVRRA 245
                             **..449999*****996 PP
2Auxin_resp117.31.3e-38270351182
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                             +++a+++k++F+v+YnPras+seF+++++k++++l +++++GmRfkm+feted++err++G+v+g+s+ldp+rWp+SkW++L
  RcHm_v2.0_Chr5g0009381 270 VVDAITMKTAFNVYYNPRASSSEFIIPFHKFLRSLGHSFCAGMRFKMRFETEDAAERRYTGLVTGISELDPLRWPGSKWKCL 351
                             578999***************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MAGLIDLNST TEEEEETPSS GSSSNSSGSN ALISGSVCLE LWHACAGPLI SLPKKGSVVV  60
YLPQGHLEQV NDFPASVFDL PAHLFCRVVD VKLHAETGSD EVYAQVQLVP ESEEFEHKLG  120
EGETDADGDE DAEALEKSTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP  180
SQELVAKDLH GLEWRFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF LRGEDGELRL  240
GVRRAAQVKA SATYPTPCSQ HLNYNSVAEV VDAITMKTAF NVYYNPRASS SEFIIPFHKF  300
LRSLGHSFCA GMRFKMRFET EDAAERRYTG LVTGISELDP LRWPGSKWKC LVVRWDDIDT  360
SKQHGRVSPW EIEPSGSISN SSGLMASGLK RSRMGLSAEK QEFPVPHGIG ASDFGESLRF  420
QKVLQGQEIS GFDTPFGSIG GQNQHPSESR RVFHGSIGSR GNDLRNSLVN SEIASKGFGE  480
SFRFQKVLQG QEIFPSTPYG RAPATSEARE YGSPGIFDGF QVPSFRNGWS TMMQGNNTPM  540
HRAAPVQVSS PSSVLMFQQA MNAGAEFNSV YNVHNQEEQR IMQRNPYSES DGGKPTSSSF  600
CERSFSREGH GGMNSFQHAI SHPPHSSQSS LRGSQDMVSS CKSSCRLFGF SLSEETHAPN  660
KVDNSTSVAS TLDPGASLFP NVEPRFHSKP PLMSAAVGIP CTKEWAFDWR GERMESCLQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein