PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0008831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13524.4 Da PI: 8.4119 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.1e-11 | 36 | 102 | 1 | 62 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvlt 62 f+k+ ++sdv++ gr+vlpk+ ae++ +++ +e+++l+++d +s+++W ++++y +++s++yvl+ RcHm_v2.0_Chr5g0008831 36 FKKEIKKSDVGSWGRIVLPKREAEKYlpSLSDKEGIELMIKDaLSNQEWGLTYKYwtNNNSRMYVLE 102 88999***********************77777999******9999*******99888999999997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MGGERDATDA GSDAQNNEQD LYLFCTPGQW KLRFLFKKEI KKSDVGSWGR IVLPKREAEK 60 YLPSLSDKEG IELMIKDALS NQEWGLTYKY WTNNNSRMYV LEHTGKMKFP FGYLFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 9e-30 | B3 family protein |