PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr5g0008771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 173aa MW: 19772.8 Da PI: 10.0858 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.4 | 1.3e-18 | 59 | 150 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+l++sdv+++gr+vlpkk ae++ +++ +e+++l+++d +s ++W +k++y ++ks++yvl+ ++ +Fv++ g+++gD++ + RcHm_v2.0_Chr5g0008771 59 FEKQLKNSDVGSLGRIVLPKKEAEKYlpSLSDKEGIELRIRDaLSTQEWGLKYKYwsNNKSRMYVLE-NTGDFVRQSGVEVGDSIHL 144 99**************************77777999******9999*******99888888889999.*****************99 PP EE-SSSEE CS B3 83 kldgrsef 90 + +++++ RcHm_v2.0_Chr5g0008771 145 Y--EDECK 150 9..44554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MSRQRRGNIL RTRKAARAAA ASSRLAVGKD PSSAVSETPN EQYIYSFCTP DNKKLRMLFE 60 KQLKNSDVGS LGRIVLPKKE AEKYLPSLSD KEGIELRIRD ALSTQEWGLK YKYWSNNKSR 120 MYVLENTGDF VRQSGVEVGD SIHLYEDECK NIVSSTLLSF LLWIKMSILI FKI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 1e-48 | B3 family protein |