PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0445091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 274aa    MW: 29833.3 Da    PI: 6.9284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0445091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-11157204455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  RcHm_v2.0_Chr4g0445091 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204
                             8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MDPPVSLVNE CSYSNGNATS YNLSEIWQFP MNSAGAGMGG GLGLRRPSFG QFGDVSGAIR  60
DVLGGGDPSP MSLDHRARKR RDAEDESSPK SSGNIGANGC DGKRLKTAGR CGDENLEAKA  120
EAETSSGKPV EQNTQPPDPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV  180
PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNTR MTPAIEVFPS KEFGQQTFDT  240
AAMAFGTQPP REYSRGSSPE WLHMQVGGGF ERTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-92bHLH family protein