PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0443621
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 619aa    MW: 68318.9 Da    PI: 5.1636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0443621genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4455.3e-1362516101374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+ L++cAeav+ +++ la+al++++s la +++ +m+++a++f+eALa+r+ +    +y    p++  +++ se l++   f+e+
  RcHm_v2.0_Chr4g0443621 251 LVHGLMACAEAVQRKNFDLAKALVTQISYLAISQAGAMRKVATFFAEALAQRIWG----VY----PQPPIDHTYSEMLQM--HFYET 327
                             6899***************************************************....44....444443334555444..6**** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+lkf+h+taNqaIle ++ ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v
  RcHm_v2.0_Chr4g0443621 328 CPYLKFAHFTANQAILEGFQDKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAETIHV 414
                             *************************************************************************************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +fe++ +va++l+dl+ ++L+++p   E++aVn+v++lh+ll++++++++    vL++vk+++P++v+vveqea+hn++ Fl+rf e
  RcHm_v2.0_Chr4g0443621 415 EFEYRGFVANSLADLDASMLELRPseVESVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFNE 497
                             ************************88899*************99999988....********************************* PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                             +l+yys+lfdsle ++   +++++++++++lg++i nvvaceg +r+erhetl++Wr r++++GF pv+l+++a kqa++ll+ ++ 
  RcHm_v2.0_Chr4g0443621 498 SLHYYSTLFDSLEGSV---NSQDKMMSEVYLGKQIFNVVACEGPDRVERHETLAQWRTRFDASGFAPVHLGSNAFKQASMLLALFAg 581
                             ***************7...899999999*********************************************************** PP

                    GRAS 346 sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +dgyrvee++g+l+lgW++rpL+++SaW+
  RcHm_v2.0_Chr4g0443621 582 GDGYRVEENDGCLMLGWHTRPLIATSAWK 610
                             ****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MKREHQSHPH HPNPNPSMAS TSNDKAGKAA IWEDSQRDDG MDELLAVLGY KVKSSNMADV  60
AQKLEQLEEF MGTVQEDGLS QLASDTVHYN PSDLSTWLES MISEITPPPN FDPVMAAPPP  120
LNHLAGSSVV LDDSFLAPAE SSTITSIDFG DQQHMNTNSK SLSPRTQFED CSSSNYELKA  180
IPGKAIFSSQ TQFDSSPREP KRLKPSSSSD FYSTTTTTTN NSSLQPVVSL PNNESTRPVV  240
VVDSQENGVR LVHGLMACAE AVQRKNFDLA KALVTQISYL AISQAGAMRK VATFFAEALA  300
QRIWGVYPQP PIDHTYSEML QMHFYETCPY LKFAHFTANQ AILEGFQDKK RVHVIDFSMN  360
QGMQWPALMQ ALALRPGGPP AFRLTGIGPP AADNSDHLQE VGWKLAQLAE TIHVEFEYRG  420
FVANSLADLD ASMLELRPSE VESVAVNSVF ELHKLLARPG AIDKVLSVVK QMKPEIVTVV  480
EQEANHNGPV FLDRFNESLH YYSTLFDSLE GSVNSQDKMM SEVYLGKQIF NVVACEGPDR  540
VERHETLAQW RTRFDASGFA PVHLGSNAFK QASMLLALFA GGDGYRVEEN DGCLMLGWHT  600
RPLIATSAWK LGCSQSVTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein