PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439861
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 377aa    MW: 41252 Da    PI: 8.9552
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439861genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.81.1e-3286143258
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                             ++v+Y+eClkNhAaslGgha+DGCgEf ps+ ++ +++++lkCaACgCHRnFHRr+  
  RcHm_v2.0_Chr4g0439861  86 TAVVYRECLKNHAASLGGHALDGCGEFFPSPISNpANPTSLKCAACGCHRNFHRRDAP 143
                             5799***************************9999********************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MTKTKRSPFF VENFELNKTL IFDSRFPTQF MDCKPISTTA TATINTPDTD TELIPTSDPK  60
SGAFRSLSFN NGPLKPRHPL PPPPHTAVVY RECLKNHAAS LGGHALDGCG EFFPSPISNP  120
ANPTSLKCAA CGCHRNFHRR DAPDEPRAFT PPKAFLVSPT PHHRLLPPPP AQHSSSPSPS  180
RSTSPGPSTT LSPHSPPPVS HVPPSFFGTP SQMLLALSSA AFTAPPPSDE KVRNPTAGKT  240
GRKRSRTKFS QEQKDKMFCF ADKLGWKLQR SEEKFVEDFC DGIGIGRNVF KVWMHNNKHH  300
MMKKQRLLSS AGLINDGDDG GDAGGGASFD STAEENNNNN NNNNVNVIID SHNESSRDHH  360
HDHQRFYLSN NGSSSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-47ZF-HD family protein