PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0439451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 337aa    MW: 38384.4 Da    PI: 8.9104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0439451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.21.9e-54601851128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeel+v+yLk+++ +k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg
  RcHm_v2.0_Chr4g0439451  60 LPPGFRFHPTDEELIVYYLKNQAISKPCPV-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATG 145
                             79****************************.89***************99999********************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             +dk+++s  ++ vg+kk Lvfykgr pkg+ktdW+mheyrl
  RcHm_v2.0_Chr4g0439451 146 TDKAIHS-ASKYVGVKKALVFYKGRPPKGVKTDWIMHEYRL 185
                             *******.9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MTNHSPCDAT KRQIPPTIKG GALSVQTFQT LHFSKTLTIS RFDPALLPTT TMEANNGSGL  60
PPGFRFHPTD EELIVYYLKN QAISKPCPVS IIPEVDIYKF DPWQLPEKAE FGENEWYFFS  120
PRDRKYPNGV RPNRATVSGY WKATGTDKAI HSASKYVGVK KALVFYKGRP PKGVKTDWIM  180
HEYRLSDSKR QASKQLGSMR LDDWVLCRIY KKRHVNKAYL DDPKLEDSSP QMEHFTAAND  240
VKEEQVLNFP RTFSLTSLLD MDYLGPISQL LNDNPTYDFH NMLANNAGLN GQTFQFGDQI  300
PYQSADSARF QVMNHSGTFN QPLFVNPAYN NMNGLNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-117NAC family protein