PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr4g0431901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 510aa    MW: 57144.1 Da    PI: 5.1704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr4g0431901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1131425081374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             lv+ L++cAeav+ +d++ a+alL++l+++a   g+++qR+a++f +AL  rla  v+ l + + ++++    sse+  al+l +e+
  RcHm_v2.0_Chr4g0431901 142 LVQKLISCAEAVACRDKTHASALLSELRTNAQVFGTSFQRVASCFIQALTDRLAL-VQPLGA-VGVTTKMIAVSSEKDEALHLVYEI 226
                             6899**************************************************8.445543.333333345688888999****** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA 169
                             +P ++fsh++aN  Ilea+ege+ vH+iD++++    +G QW++L+++LasR+++p  +lRiTgvg+    s e+le++g+ L+ +A
  RcHm_v2.0_Chr4g0431901 227 CPHIQFSHFVANTSILEAFEGESYVHVIDLGMTlgllHGYQWLNLMESLASRTGQPLrRLRITGVGD----SGERLEAIGNELKLYA 309
                             *****************************98753333789*************65544*********....**************** PP

                    GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                             ++++++f f + v+++le+l+ e++++  gE+l++n++lqlh l++es    +   +vL+++ +lsPk++v+veq+++hn++ Fl r
  RcHm_v2.0_Chr4g0431901 310 QSMELDFGFLA-VESNLENLKAEDFNLIDGEVLIINSILQLHCLVKESRGALN---SVLQTLYDLSPKLMVLVEQDSSHNGPFFLGR 392
                             ***********.79*******************************88877777...8****************************** PP

                    GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                             f+eal+ ysa+fdsl+a lpr +  r+k+E++++g+ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+p+pl+  + +qa   l++
  RcHm_v2.0_Chr4g0431901 393 FMEALHNYSAIFDSLDAMLPRYDTRRAKMEQFYFGEEIKNIVSCEGPARVERHERVDQWRRRMRRAGFQPAPLK--MITQATKWLEM 477
                             *************************************************************************6..689******** PP

                    GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +s+gy++ e++g++vlgWk++p+++vS+Wr
  RcHm_v2.0_Chr4g0431901 478 NASEGYTIVEDKGCFVLGWKSKPIIAVSCWR 508
                             ******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MTSGFYVQPC EVYGNNKCDE VIGLDLNLSS MSCLPFPSLS TLENNSAVWE IPFIDETRNH  60
KRVKLEDSAN ESIISTNYSL YSGSGTGSMY TSGFNSLSRI QFRDHISAYT RRYLAAEKME  120
EEASTLLGGE PEEEGSGDGM KLVQKLISCA EAVACRDKTH ASALLSELRT NAQVFGTSFQ  180
RVASCFIQAL TDRLALVQPL GAVGVTTKMI AVSSEKDEAL HLVYEICPHI QFSHFVANTS  240
ILEAFEGESY VHVIDLGMTL GLLHGYQWLN LMESLASRTG QPLRRLRITG VGDSGERLEA  300
IGNELKLYAQ SMELDFGFLA VESNLENLKA EDFNLIDGEV LIINSILQLH CLVKESRGAL  360
NSVLQTLYDL SPKLMVLVEQ DSSHNGPFFL GRFMEALHNY SAIFDSLDAM LPRYDTRRAK  420
MEQFYFGEEI KNIVSCEGPA RVERHERVDQ WRRRMRRAGF QPAPLKMITQ ATKWLEMNAS  480
EGYTIVEDKG CFVLGWKSKP IIAVSCWRCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-75GRAS family protein