PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0430121

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 481aa MW: 52968.9 Da PI: 8.9599

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0430121	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.6e-41	186	261	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+ RcHm_v2.0_Chr4g0430121 186 RCQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVNGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKP 261 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MNSLLMMEWN EKHPSLWDWE NVFMFGAKVT ENPKKLQPTD WSVEGERGMN SESFCSPGGD 60 GGSAVSGSDL GDGTSKSSKS GSVNSSVGES KKSNFSLEAF EGFPKDFVDK KQSAREAEAL 120 GSSPTHEISA GSGEPLLSLK LGKRMYFEDV CAGNNAKTSA VSVISTPMGT KAKRFKSIGQ 180 STAATRCQVE GCNIDLSSAK DYHRKHRICA NHSKSPKVVV NGVERRFCQQ CSRFHGLSEF 240 DEKKRSCRRR LSDHNARRRK PLPGALQDRA RLSSSLYSTD GRQDMSLVLD QAPCVYSRNA 300 TNLSWDGACS FRLTPTKDYF PNPAKGGGTS RQLNLAENRT SSSLTMLYQD SSRLPPSKGT 360 ASQVLNRGAE ESMISFNLDA PQNLNRALSL LSTSSWASCE AKPVSLDNTN HSYHTKMPRP 420 VMQAMNQGLP LSSEYWQNEQ PSLNTTQVNV SHSQSNGSNQ YQDLHLFKGP YEFGYNTNHF 480 N

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MNSLLMMEWN EKHPSLWDWE NVFMFGAKVT ENPKKLQPTD WSVEGERGMN SESFCSPGGD  60
GGSAVSGSDL GDGTSKSSKS GSVNSSVGES KKSNFSLEAF EGFPKDFVDK KQSAREAEAL  120
GSSPTHEISA GSGEPLLSLK LGKRMYFEDV CAGNNAKTSA VSVISTPMGT KAKRFKSIGQ  180
STAATRCQVE GCNIDLSSAK DYHRKHRICA NHSKSPKVVV NGVERRFCQQ CSRFHGLSEF  240
DEKKRSCRRR LSDHNARRRK PLPGALQDRA RLSSSLYSTD GRQDMSLVLD QAPCVYSRNA  300
TNLSWDGACS FRLTPTKDYF PNPAKGGGTS RQLNLAENRT SSSLTMLYQD SSRLPPSKGT  360
ASQVLNRGAE ESMISFNLDA PQNLNRALSL LSTSSWASCE AKPVSLDNTN HSYHTKMPRP  420
VMQAMNQGLP LSSEYWQNEQ PSLNTTQVNV SHSQSNGSNQ YQDLHLFKGP YEFGYNTNHF  480
N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	260	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-72	SBP family protein