PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr4g0424331

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 379aa MW: 42708.9 Da PI: 6.3547

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr4g0424331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++++G g+W++ ++ g+ R++k+c++rw +yl RcHm_v2.0_Chr4g0424331 14 RGRWTAEEDEILTNYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	57.6	2.8e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia++++ gRt++++k++w+++l RcHm_v2.0_Chr4g0424331 67 RGNITQEEEETIVKLHTALGNR-WSLIAAHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLRRGNI TQEEEETIVK LHTALGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIYTFT 120 KLMKNECLIP TMINNVSKLA AAKSKRRVRT SRSAMKSKNK LNKNGTVLAP FPQVPKPAYK 180 TDVFESLTRE NPNQVQTSHS MGLECWAPKE RDEKEEEEKT IRTLGGVQGS CLDITAGMIS 240 STTPAIYAAN NGEKEALDPY ECVDSDVIVD HNPSGSTTVV GFKQQRENGV MGFTDDHEVT 300 IKSHQGIWSS NIEGSCGEMY AFSSPLNAAF DDHEWLDCDW FGGGGGLQCH DDELELWGER 360 EVRIPWLWES GNDVGDQRD

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRTDLRRGNI TQEEEETIVK LHTALGNRWS LIAAHLPGRT DNEIKNYWNS HLSRKIYTFT  120
KLMKNECLIP TMINNVSKLA AAKSKRRVRT SRSAMKSKNK LNKNGTVLAP FPQVPKPAYK  180
TDVFESLTRE NPNQVQTSHS MGLECWAPKE RDEKEEEEKT IRTLGGVQGS CLDITAGMIS  240
STTPAIYAAN NGEKEALDPY ECVDSDVIVD HNPSGSTTVV GFKQQRENGV MGFTDDHEVT  300
IKSHQGIWSS NIEGSCGEMY AFSSPLNAAF DDHEWLDCDW FGGGGGLQCH DDELELWGER  360
EVRIPWLWES GNDVGDQRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	2e-77	MYB family protein