PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr4g0405511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 205aa MW: 23334.7 Da PI: 5.3873 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 101 | 137 | 15 | 55 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +i +++ L++l+P + +k Ka ++ + ++YI+sLq RcHm_v2.0_Chr4g0405511 101 KISQRMKILQDLVPGC----NKVIGKALVVDEIINYIQSLQ 137 899************9....677*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MVFVIQGNAS SGMGVAEDCC NTFLELQRKK AFRYVIFKID EKKKEVVVEK TRGPAESYDD 60 FTGSLPENDC RYAIYDFDFV TSENCQKSKI FFIARFVSFE KISQRMKILQ DLVPGCNKVI 120 GKALVVDEII NYIQSLQRQV EFLSLNLEAV NSRVNMNPAI EVFPSKDQFD AAALLFGPHT 180 PREYVQGSQA EWLHMQVGGS FERTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 5e-50 | bHLH family protein |