PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr4g0400541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18087.2 Da PI: 9.4641 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.2 | 2.1e-25 | 11 | 142 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknra 77 lppG+rF P++e+l+++yL +k + + + + ike+d+y+++P dLp + +++++wy ++ r k +r RcHm_v2.0_Chr4g0400541 11 LPPGCRFYPSEEQLLCYYLSHKNGAGQassgNGGYDLIKELDLYDHDPFDLPdYacysyGHGGRRRHWYCYTVRVVK-------ERR 90 79********************998884444334458***************5356543222355588888877654.......344 PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyr 127 +ksgyW+ +g+ ++v+ + ++++ g + + fy g++pk +++tdWv+ +y+ RcHm_v2.0_Chr4g0400541 91 AKSGYWRRKGRVRDVVGRgGNAVLGRRSSYEFYLGSSPKtAVRTDWVLYQYA 142 689**************9566679*********997766167*********6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence |
MGDAKATSYY LPPGCRFYPS EEQLLCYYLS HKNGAGQASS GNGGYDLIKE LDLYDHDPFD 60 LPDYACYSYG HGGRRRHWYC YTVRVVKERR AKSGYWRRKG RVRDVVGRGG NAVLGRRSSY 120 EFYLGSSPKT AVRTDWVLYQ YARVDHVQVE LFRNQAG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 8e-17 | NAC family protein |